View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_31 (Length: 426)
Name: NF12598_low_31
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 38398506 - 38398911
Alignment:
| Q |
1 |
atcacagaggtgtaccacaattggcagaagctggtaagcacactttaatctacttatccaaaacatcacaaaattgagtgaaatgcatctactgttaact |
100 |
Q |
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| T |
38398506 |
atcacagaggtgtaccacaattggcagaagctggtaag-acactttaatctacttttccaaaacatcacaaaattgagtgaaatgcatctattgttaact |
38398604 |
T |
|
| Q |
101 |
tgtcttatttttcttgtaccaatttatattgctatttttgttcttaacaatttttcctctttaattaatctgactacagaatcatgatagacaactatgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38398605 |
tgtcttatttttcttgtaccaatttatattgctatttttgttcttaacaatttttcctctttaattaatctgactacagaatcatgatagacaactatgg |
38398704 |
T |
|
| Q |
201 |
aagttaggaacactgccacctggtcttataacattctggaaacgcacgttcccgctgaaccgatcttggcatgtcttaggtcttggcttcaaccccaatg |
300 |
Q |
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| T |
38398705 |
aagttaggaacactgccacctggtcttataacattctggaaacgcacgttcccgctgaaccgatcttggcatgtcttaggtcttggctacaaccccaatg |
38398804 |
T |
|
| Q |
301 |
tcaaccaaaaagatattgaaagggctgctgtaattcactataacggaaacttgaaaccgtggctggagataagtataccgaagtttaaaggttattggac |
400 |
Q |
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| T |
38398805 |
tcaaccaaaaagatattgaaagggctgctgtaattcactataacggaaacttgaaaccgtggctggagataagtataccgaagtttaaaggttattggac |
38398904 |
T |
|
| Q |
401 |
gaagtat |
407 |
Q |
| |
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| T |
38398905 |
gaagtat |
38398911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 8e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 150 - 406
Target Start/End: Complemental strand, 56069685 - 56069423
Alignment:
| Q |
150 |
atttttcctctttaattaatctgactacagaatcatgatagacaactatggaagttaggaacactgccacctggtcttataacattctggaaacgcacgt |
249 |
Q |
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||||||||||| ||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||| || | |
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| T |
56069685 |
atttttcctctctaattaatccgactacagaatcatgatagacaattatggaaattaggaacactgccacctggtcttatgacattctggaaacatactt |
56069586 |
T |
|
| Q |
250 |
tcccgctgaaccgatcttggcatgtcttaggtcttggcttcaaccccaatgtcaaccaaaaagatattgaaagggctgctgtaattcac------tataa |
343 |
Q |
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| T |
56069585 |
tcccgctgaaccgatcctggcacgtcttgggtcttggctacaaccctgatgtcaaccaaaaagatatcgaaagtgctgctgtaatacacactatatataa |
56069486 |
T |
|
| Q |
344 |
cggaaacttgaaaccgtggctggagataagtataccgaagtttaaaggttattggacgaagta |
406 |
Q |
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| T |
56069485 |
tggaaatatgaaaccatggctcgagataagtattcaaaagtttcaaggttattggacgaagta |
56069423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 56069812 - 56069715
Alignment:
| Q |
1 |
atcacagaggtgtaccacaattggcagaagctggtaagcacactttaatctacttatccaaaacatcacaaaattgagtgaaatgcatctactgttaa |
98 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||||| ||||| |||||||| | |||||||||||| |||||||||| ||||||| |
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| T |
56069812 |
atcacagaggtgtaccacaaatggcagaaactggtaagcacactttaatttacttttccaaaacttgacaaaattgagttaaatgcatctgctgttaa |
56069715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 177 - 407
Target Start/End: Original strand, 10170992 - 10171222
Alignment:
| Q |
177 |
cagaatcatgatagacaactatggaagttaggaacactgccacctggtcttataacattctggaaacgcacgttcccgctgaaccgatcttggcatgtct |
276 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| |||||| | | |||||||| | |
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| T |
10170992 |
cagaatcatgatagacaactgtggaagttaggaacactgccaccaggtctcataaccttctggaaacgcactttcccactgaacaaagcgtggcatgtgt |
10171091 |
T |
|
| Q |
277 |
taggtcttggcttcaaccccaatgtcaaccaaaaagatattgaaagggctgctgtaattcactataacggaaacttgaaaccgtggctggagataagtat |
376 |
Q |
| |
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| |||||||||| ||| ||||| |||||||||||||||||||| |||||||||| || ||||| || || ||| |||| || ||| ||||||||||||| |
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| T |
10171092 |
tgggtcttggctacaatcccaacgtcaaccaaaaagatattgatcgggctgctgttatgcactacaatgggaacatgaagccatggttggagataagtat |
10171191 |
T |
|
| Q |
377 |
accgaagtttaaaggttattggacgaagtat |
407 |
Q |
| |
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|| ||||||| |||||| ||||| |||||| |
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| T |
10171192 |
tcccaagtttagaggttactggacaaagtat |
10171222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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