View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12598_low_32 (Length: 426)

Name: NF12598_low_32
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12598_low_32
NF12598_low_32
[»] chr2 (13 HSPs)
chr2 (8-409)||(16440515-16440914)
chr2 (350-407)||(19012306-19012363)
chr2 (350-395)||(24609366-24609411)
chr2 (350-396)||(19121407-19121453)
chr2 (350-396)||(20855190-20855236)
chr2 (350-396)||(24370736-24370782)
chr2 (174-219)||(16442274-16442319)
chr2 (358-409)||(24819889-24819941)
chr2 (358-409)||(24322532-24322583)
chr2 (358-409)||(20282867-20282919)
chr2 (358-409)||(30948560-30948612)
chr2 (364-409)||(24824280-24824326)
chr2 (358-409)||(25803093-25803145)
[»] chr4 (14 HSPs)
chr4 (349-409)||(11325685-11325745)
chr4 (357-409)||(12345263-12345315)
chr4 (349-396)||(8561609-8561656)
chr4 (350-409)||(38652891-38652949)
chr4 (350-399)||(5676218-5676267)
chr4 (349-397)||(23793327-23793375)
chr4 (358-408)||(12807488-12807539)
chr4 (349-384)||(13882822-13882857)
chr4 (350-409)||(25190918-25190976)
chr4 (358-409)||(14009524-14009576)
chr4 (350-392)||(11921742-11921784)
chr4 (358-396)||(33330317-33330355)
chr4 (358-410)||(8091196-8091249)
chr4 (365-409)||(11049011-11049056)
[»] scaffold0001 (4 HSPs)
scaffold0001 (350-409)||(33611-33670)
scaffold0001 (350-409)||(38918-38977)
scaffold0001 (349-409)||(81906-81966)
scaffold0001 (350-409)||(521483-521542)
[»] chr7 (16 HSPs)
chr7 (350-407)||(17912322-17912379)
chr7 (350-395)||(11483155-11483200)
chr7 (357-409)||(4465088-4465140)
chr7 (357-409)||(30061350-30061402)
chr7 (350-383)||(4255912-4255945)
chr7 (358-409)||(11994598-11994650)
chr7 (349-409)||(12348708-12348768)
chr7 (358-409)||(3375809-3375859)
chr7 (349-380)||(4460087-4460118)
chr7 (365-407)||(15706551-15706594)
chr7 (357-396)||(17205855-17205894)
chr7 (350-409)||(38878166-38878225)
chr7 (356-409)||(8521461-8521514)
chr7 (358-409)||(4313977-4314029)
chr7 (349-409)||(15523766-15523825)
chr7 (358-409)||(48804879-48804931)
[»] chr1 (14 HSPs)
chr1 (350-395)||(12059077-12059122)
chr1 (350-409)||(25404378-25404437)
chr1 (350-409)||(26194964-26195023)
chr1 (350-409)||(23299614-23299673)
chr1 (350-409)||(16147744-16147803)
chr1 (350-383)||(13798688-13798721)
chr1 (365-409)||(44538941-44538986)
chr1 (350-409)||(20150256-20150315)
chr1 (357-396)||(20860002-20860041)
chr1 (356-409)||(16069165-16069219)
chr1 (359-409)||(20498287-20498336)
chr1 (365-409)||(17987312-17987357)
chr1 (356-409)||(30817980-30818032)
chr1 (358-409)||(18379516-18379568)
[»] chr6 (14 HSPs)
chr6 (350-409)||(24392187-24392246)
chr6 (358-409)||(29094276-29094327)
chr6 (355-409)||(26822585-26822638)
chr6 (358-408)||(12656608-12656659)
chr6 (350-409)||(28733434-28733493)
chr6 (350-396)||(12659740-12659786)
chr6 (363-409)||(17744193-17744239)
chr6 (357-409)||(19612037-19612089)
chr6 (363-409)||(19569461-19569508)
chr6 (357-396)||(23346481-23346520)
chr6 (357-408)||(23509699-23509750)
chr6 (350-409)||(25030432-25030490)
chr6 (357-409)||(18628165-18628217)
chr6 (350-410)||(18974394-18974454)
[»] scaffold0074 (1 HSPs)
scaffold0074 (350-393)||(22032-22075)
[»] chr8 (11 HSPs)
chr8 (350-396)||(24342629-24342675)
chr8 (358-409)||(23694515-23694567)
chr8 (350-409)||(24059697-24059756)
chr8 (358-408)||(29004367-29004418)
chr8 (363-409)||(42417801-42417848)
chr8 (350-392)||(14155981-14156023)
chr8 (358-409)||(18162758-18162810)
chr8 (358-409)||(26827206-26827258)
chr8 (356-409)||(1989785-1989839)
chr8 (358-409)||(6569915-6569967)
chr8 (350-409)||(18008837-18008894)
[»] scaffold0443 (1 HSPs)
scaffold0443 (352-393)||(3795-3836)
[»] chr5 (9 HSPs)
chr5 (348-409)||(23028886-23028946)
chr5 (349-409)||(16677812-16677872)
chr5 (358-409)||(18482985-18483037)
chr5 (358-409)||(20968471-20968523)
chr5 (363-409)||(3388780-3388827)
chr5 (358-409)||(19890475-19890526)
chr5 (350-409)||(22171527-22171585)
chr5 (356-409)||(20167484-20167538)
chr5 (358-409)||(9728185-9728237)
[»] scaffold0049 (1 HSPs)
scaffold0049 (357-409)||(31852-31904)
[»] scaffold0018 (2 HSPs)
scaffold0018 (358-409)||(11863-11915)
scaffold0018 (358-409)||(18055-18107)
[»] chr3 (11 HSPs)
chr3 (357-397)||(11848176-11848216)
chr3 (350-392)||(42243832-42243874)
chr3 (365-408)||(1991571-1991615)
chr3 (357-396)||(11577054-11577093)
chr3 (358-407)||(10850020-10850070)
chr3 (350-396)||(15494814-15494860)
chr3 (350-395)||(9774377-9774422)
chr3 (358-409)||(2722699-2722751)
chr3 (349-397)||(8685141-8685189)
chr3 (358-409)||(25055761-25055813)
chr3 (358-409)||(50908199-50908251)
[»] scaffold0175 (1 HSPs)
scaffold0175 (358-407)||(11902-11952)
[»] scaffold0213 (1 HSPs)
scaffold0213 (350-395)||(22332-22377)
[»] scaffold0011 (1 HSPs)
scaffold0011 (352-409)||(175639-175696)
[»] scaffold0251 (1 HSPs)
scaffold0251 (358-409)||(18215-18267)
[»] scaffold0142 (1 HSPs)
scaffold0142 (358-409)||(24542-24594)
[»] scaffold0064 (1 HSPs)
scaffold0064 (358-409)||(49546-49598)
[»] scaffold0046 (1 HSPs)
scaffold0046 (358-409)||(21211-21263)
[»] scaffold0021 (1 HSPs)
scaffold0021 (356-409)||(100941-100995)
[»] scaffold0088 (1 HSPs)
scaffold0088 (360-397)||(39280-39317)
[»] scaffold0375 (1 HSPs)
scaffold0375 (358-409)||(14179-14231)
[»] scaffold0012 (1 HSPs)
scaffold0012 (358-409)||(186945-186997)


Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 8 - 409
Target Start/End: Complemental strand, 16440914 - 16440515
Alignment:
Q  8 aacgttacataatttcggttgtgatttcacttgggttttttggggattgaattggtagttaattaatagaatactaatttgtttcggtagaatatctaaa 107  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16440914 aacgttacataatttgggttgtgatttcacttgggttttttggggattgaattggtagttaattaatagaatactaatttgtttcagtagaatatctaaa 16440815  T
Q  108 tatgacccatagttccatgtggcattgaaacatatcagggaaagatgaagtgcaatgaaacatctatcatcaaaacacaaaacatatataaacactaaat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  16440814 tatgacccatagttccatgtggcattgaaacatatcagggaaagatgaagtgcaatgaaacatctatcatcaaaacacaa--catatataaacactaaat 16440717  T
Q  208 tcttaacgtgaacccaaagaaatagtagaaattccatcaaggtgttgagggaggatgagggttgggtggttacacccttggagattcgtaagaaggtggt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16440716 tcttaacgtgaacccaaagaaatagtagaaattccatcaaggtgttgagggaggatgagggttgggtggttacacccttggagattcgtaagaaggtggt 16440617  T
Q  308 ggattattttacgactcatgtagcggcaaataggtgggatcgtgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgtt 407  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||| |||||||||||| |||||||||| |||||||    
T  16440616 ggattattttacgactcatgtggcggcaaataggtgggatcgtgatgtagtaaatccgtaaatgcacgatttaccggtgtaataataaaagagtatcgtt 16440517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 350 - 407
Target Start/End: Original strand, 19012306 - 19012363
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgtt 407  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||    
T  19012306 tgatgtagtaaatccgcaagtgcacggtttaccgatgtagtaataaaatagtatcgtt 19012363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 350 - 395
Target Start/End: Original strand, 24609366 - 24609411
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataa 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24609366 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataa 24609411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 19121407 - 19121453
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaa 396  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||    
T  19121407 tgatgtagtaaatccgcaagtgcacggtttactgatgtagtaataaa 19121453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 20855190 - 20855236
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaa 396  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  20855190 tgatgtagtaaatctgcaagtgcacggtttaccgatgtagtaataaa 20855236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 24370736 - 24370782
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaa 396  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||    
T  24370736 tgatgtagtaaatccgcaagtgcacggtttaccgatgtcgtaataaa 24370782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 16442319 - 16442274
Alignment:
Q  174 tcatcaaaacacaaaacatatataaacactaaattcttaacgtgaa 219  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||    
T  16442319 tcatcaaaacacaatacatatataaacactaaattcttaatgtgaa 16442274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 24819889 - 24819941
Alignment:
Q  358 taaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| |||||||||||||||| ||||||||||||||||||||| |||||||||    
T  24819889 taaaaccgcaagtgcacggttctaccggtgtagtaataaaagagtatcgttcc 24819941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 24322583 - 24322532
Alignment:
Q  358 taaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||| ||||||||||||||||||| |||| |||||||||| |||||||||    
T  24322583 taaatctgcaagtgcacggtttaccgatgtaataataaaagattatcgttcc 24322532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 20282919 - 20282867
Alignment:
Q  358 taaatccgcaagtgcacggttt-accggtgtagtaataaaagaatatcgttcc 409  Q
    |||| ||||||||||||||||| |||||| ||||||||||||| |||||||||    
T  20282919 taaaaccgcaagtgcacggttttaccggtatagtaataaaagagtatcgttcc 20282867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 30948560 - 30948612
Alignment:
Q  358 taaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| |||||||||||||||| ||||||||||||||| ||||| |||||||||    
T  30948560 taaaaccgcaagtgcacggttctaccggtgtagtaatgaaagagtatcgttcc 30948612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 24824280 - 24824326
Alignment:
Q  364 cgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    ||||||||||||||| ||||||||||| ||||||||| |||||||||    
T  24824280 cgcaagtgcacggttctaccggtgtaggaataaaagagtatcgttcc 24824326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 25803093 - 25803145
Alignment:
Q  358 taaatccgcaagtgcacggt-ttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| ||||||||||||||| ||||||  |||||||||||||| |||||||||    
T  25803093 taaaaccgcaagtgcacggtcttaccgaagtagtaataaaagagtatcgttcc 25803145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 349 - 409
Target Start/End: Complemental strand, 11325745 - 11325685
Alignment:
Q  349 gtgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||    
T  11325745 gtgatgtagtaaatccacaagtgcacggtttaccgatgtagtaataaaagagtatcgttcc 11325685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 357 - 409
Target Start/End: Original strand, 12345263 - 12345315
Alignment:
Q  357 gtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||||||||||||||||||||||||  |||||||||||||| |||||||||    
T  12345263 gtaaatccgcaagtgcacggtttaccgaagtagtaataaaagattatcgttcc 12345315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 396
Target Start/End: Original strand, 8561609 - 8561656
Alignment:
Q  349 gtgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaa 396  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||    
T  8561609 gtgatgtagtaaatccgcaagtgcacggtttactgatgtagtaataaa 8561656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 409
Target Start/End: Complemental strand, 38652949 - 38652891
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||||||||||||| ||||||||| ||||||||||||| |||||||| ||||||||||    
T  38652949 tgatgtagtaaatccgtaagtgcacgatttaccggtgtagcaataaaag-atatcgttcc 38652891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 399
Target Start/End: Complemental strand, 5676267 - 5676218
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaaga 399  Q
    ||||||||||||| |||||||||| ||||||||| |||||||||||||||    
T  5676267 tgatgtagtaaattcgcaagtgcatggtttaccgatgtagtaataaaaga 5676218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 397
Target Start/End: Original strand, 23793327 - 23793375
Alignment:
Q  349 gtgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaa 397  Q
    ||||||| |||||||||||||||||||||||||||  ||||||||||||    
T  23793327 gtgatgtcgtaaatccgcaagtgcacggtttaccgaagtagtaataaaa 23793375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 358 - 408
Target Start/End: Original strand, 12807488 - 12807539
Alignment:
Q  358 taaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttc 408  Q
    |||| |||||||||||||||| ||||||||||||||||||||| ||||||||    
T  12807488 taaaaccgcaagtgcacggttctaccggtgtagtaataaaagagtatcgttc 12807539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 384
Target Start/End: Original strand, 13882822 - 13882857
Alignment:
Q  349 gtgatgtagtaaatccgcaagtgcacggtttaccgg 384  Q
    ||||||||||||||||||||||||||||||||||||    
T  13882822 gtgatgtagtaaatccgcaagtgcacggtttaccgg 13882857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 409
Target Start/End: Complemental strand, 25190976 - 25190918
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    ||||||||||||||| ||||||||||||||||||  |||||||| ||||| |||||||||    
T  25190976 tgatgtagtaaatccacaagtgcacggtttaccgaagtagtaat-aaagagtatcgttcc 25190918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 14009524 - 14009576
Alignment:
Q  358 taaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| |||||||||||||||| |||||  ||||||||||||||||||||||||    
T  14009524 taaaaccgcaagtgcacggttataccgaagtagtaataaaagaatatcgttcc 14009576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 392
Target Start/End: Original strand, 11921742 - 11921784
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaa 392  Q
    |||||||||||||| |||||||||||||||||||  |||||||    
T  11921742 tgatgtagtaaatctgcaagtgcacggtttaccgaagtagtaa 11921784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 396
Target Start/End: Original strand, 33330317 - 33330355
Alignment:
Q  358 taaatccgcaagtgcacggtttaccggtgtagtaataaa 396  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  33330317 taaatccgcaagtgcacggtttaccgaagtagtaataaa 33330355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 410
Target Start/End: Original strand, 8091196 - 8091249
Alignment:
Q  358 taaatccgcaagtgcacggt-ttaccggtgtagtaataaaagaatatcgttcct 410  Q
    |||| ||||||||||||||| ||||||  |||||||||||||| ||||||||||    
T  8091196 taaaaccgcaagtgcacggtcttaccgaagtagtaataaaagagtatcgttcct 8091249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 409
Target Start/End: Complemental strand, 11049056 - 11049011
Alignment:
Q  365 gcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    ||||||| |||||| ||||||||||||||||||||| |||||||||    
T  11049056 gcaagtgtacggttctaccggtgtagtaataaaagagtatcgttcc 11049011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 350 - 409
Target Start/End: Complemental strand, 33670 - 33611
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  33670 tgatgtagtaaatccgcaagtgcatggtttaccgatgtagtaataaaagattatcgttcc 33611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 350 - 409
Target Start/End: Complemental strand, 38977 - 38918
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  38977 tgatgtagtaaatccgcaagtgcatggtttaccgatgtagtaataaaagattatcgttcc 38918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 409
Target Start/End: Original strand, 81906 - 81966
Alignment:
Q  349 gtgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||| ||||||||| |||||||||||||||| |  |||||||||||||| |||||||||    
T  81906 gtgatgaagtaaatcctcaagtgcacggtttactgaagtagtaataaaagagtatcgttcc 81966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 409
Target Start/End: Complemental strand, 521542 - 521483
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||||||||||||||||||||||| |||| ||  ||||||| || ||| |||||||||    
T  521542 tgatgtagtaaatccgcaagtgcacgatttaacgaagtagtaaaaagagagtatcgttcc 521483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 350 - 407
Target Start/End: Complemental strand, 17912379 - 17912322
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgtt 407  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||    
T  17912379 tgatgtagtaaatccgcaagtgcacggtttaccgatgtagtaataaaaagatatcgtt 17912322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 395
Target Start/End: Original strand, 11483155 - 11483200
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataa 395  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||    
T  11483155 tgatgtagtaaatccgcaggtgcacagtttaccggtgtagtaataa 11483200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 409
Target Start/End: Original strand, 4465088 - 4465140
Alignment:
Q  357 gtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||| |||||||||||||||||||| ||||||||||||||| |||| ||||    
T  4465088 gtaaattcgcaagtgcacggtttaccgatgtagtaataaaagattatcattcc 4465140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 409
Target Start/End: Original strand, 30061350 - 30061402
Alignment:
Q  357 gtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    ||||||||||||||||||||||||||  |||||||||||||  ||||||||||    
T  30061350 gtaaatccgcaagtgcacggtttaccaatgtagtaataaaaagatatcgttcc 30061402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 383
Target Start/End: Original strand, 4255912 - 4255945
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccg 383  Q
    ||||||||||||||||||||||||||||||||||    
T  4255912 tgatgtagtaaatccgcaagtgcacggtttaccg 4255945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 11994598 - 11994650
Alignment:
Q  358 taaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| |||||| ||||||||| ||||||||||||||||||||| |||||||||    
T  11994598 taaaaccgcaaatgcacggttctaccggtgtagtaataaaagagtatcgttcc 11994650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 409
Target Start/End: Complemental strand, 12348768 - 12348708
Alignment:
Q  349 gtgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    ||||||| ||||||||||||||||| ||||||| |  ||||||||||||  ||||||||||    
T  12348768 gtgatgtcgtaaatccgcaagtgcatggtttactgaagtagtaataaaaagatatcgttcc 12348708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 3375809 - 3375859
Alignment:
Q  358 taaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| ||||||||||||||||||||| ||||||||| ||||| |||||||||    
T  3375809 taaaaccgcaagtgcacggtttaccgatgtagtaat-aaagagtatcgttcc 3375859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 380
Target Start/End: Original strand, 4460087 - 4460118
Alignment:
Q  349 gtgatgtagtaaatccgcaagtgcacggttta 380  Q
    ||||||||||||||||||||||||||||||||    
T  4460087 gtgatgtagtaaatccgcaagtgcacggttta 4460118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 407
Target Start/End: Original strand, 15706551 - 15706594
Alignment:
Q  365 gcaagtgcacggtt-taccggtgtagtaataaaagaatatcgtt 407  Q
    |||||||||||||| ||||||||||||||||||||| |||||||    
T  15706551 gcaagtgcacggttctaccggtgtagtaataaaagagtatcgtt 15706594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 396
Target Start/End: Original strand, 17205855 - 17205894
Alignment:
Q  357 gtaaatccgcaagtgcacggtttaccggtgtagtaataaa 396  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  17205855 gtaaatccggaagtgcacggtttaccgatgtagtaataaa 17205894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 409
Target Start/End: Complemental strand, 38878225 - 38878166
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||| |||||||||||||||||||||||||||  ||||||| || ||| ||| |||||    
T  38878225 tgatgtcgtaaatccgcaagtgcacggtttaccgaagtagtaaaaatagagtattgttcc 38878166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 409
Target Start/End: Original strand, 8521461 - 8521514
Alignment:
Q  356 agtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    ||||||| |||||||||| ||||||||   |||||||||||||| |||||||||    
T  8521461 agtaaattcgcaagtgcatggtttaccaaagtagtaataaaagagtatcgttcc 8521514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 4314029 - 4313977
Alignment:
Q  358 taaatccgcaagtgcacggt-ttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| ||||||||||||||| ||| || ||||||||||||||| |||||||||    
T  4314029 taaaaccgcaagtgcacggtcttatcgatgtagtaataaaagagtatcgttcc 4313977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 409
Target Start/End: Complemental strand, 15523825 - 15523766
Alignment:
Q  349 gtgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    ||||||||||||||| | ||||||||||| ||| | ||||||||| ||||| |||||||||    
T  15523825 gtgatgtagtaaatctgtaagtgcacggtatactgatgtagtaat-aaagattatcgttcc 15523766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 48804931 - 48804879
Alignment:
Q  358 taaatccgcaagtgcacggt-ttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| ||||||||||||||| ||||||  |||||||||||||| |||||||||    
T  48804931 taaagccgcaagtgcacggtcttaccgaagtagtaataaaagagtatcgttcc 48804879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 350 - 395
Target Start/End: Original strand, 12059077 - 12059122
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataa 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  12059077 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataa 12059122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 350 - 409
Target Start/End: Original strand, 25404378 - 25404437
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||||||||||||| ||||||||| ||||||| ||||||||||||||| |||||||||    
T  25404378 tgatgtagtaaatccgaaagtgcacgatttaccgatgtagtaataaaagagtatcgttcc 25404437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 350 - 409
Target Start/End: Complemental strand, 26195023 - 26194964
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    ||||| |||||||| ||||||||||||||||||| ||||||||||||||| |||||||||    
T  26195023 tgatggagtaaatctgcaagtgcacggtttaccgatgtagtaataaaagattatcgttcc 26194964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 409
Target Start/End: Complemental strand, 23299673 - 23299614
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| |||||||||||||||||||||||||||||  ||||||||||| || |||||||||    
T  23299673 tgatatagtaaatccgcaagtgcacggtttaccgaagtagtaataaatgagtatcgttcc 23299614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 409
Target Start/End: Original strand, 16147744 - 16147803
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    ||||||||||||| |||||||| || |||||||| ||||||||||| ||| |||||||||    
T  16147744 tgatgtagtaaattcgcaagtgtacagtttaccgatgtagtaataagagagtatcgttcc 16147803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 383
Target Start/End: Original strand, 13798688 - 13798721
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccg 383  Q
    ||||||||||||||||||||||||||||||||||    
T  13798688 tgatgtagtaaatccgcaagtgcacggtttaccg 13798721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 365 - 409
Target Start/End: Complemental strand, 44538986 - 44538941
Alignment:
Q  365 gcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||    
T  44538986 gcaagtgcacggttctaccggtgtagtaataaaagagtatcgttcc 44538941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 409
Target Start/End: Original strand, 20150256 - 20150315
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    ||||| |||||||||  ||||||||||||||||  |||||||||||||  ||||||||||    
T  20150256 tgatgcagtaaatcctgaagtgcacggtttaccaatgtagtaataaaaagatatcgttcc 20150315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 396
Target Start/End: Original strand, 20860002 - 20860041
Alignment:
Q  357 gtaaatccgcaagtgcacggtttaccggtgtagtaataaa 396  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  20860002 gtaaatccgcaagtgcacggtttaccgaagtagtaataaa 20860041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 409
Target Start/End: Complemental strand, 16069219 - 16069165
Alignment:
Q  356 agtaaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||| |||||||||||||||| |||||  |||||||||||||| |||||||||    
T  16069219 agtaaaaccgcaagtgcacggttctaccgaagtagtaataaaagagtatcgttcc 16069165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 409
Target Start/End: Complemental strand, 20498336 - 20498287
Alignment:
Q  359 aaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||||||||||||||||||||||  |||||||| ||||| |||||||||    
T  20498336 aaatccgcaagtgcacggtttaccgaagtagtaat-aaagagtatcgttcc 20498287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 409
Target Start/End: Complemental strand, 17987357 - 17987312
Alignment:
Q  365 gcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    ||||||| |||||| ||||||||||||||||||||| |||||||||    
T  17987357 gcaagtgtacggttctaccggtgtagtaataaaagagtatcgttcc 17987312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 409
Target Start/End: Original strand, 30817980 - 30818032
Alignment:
Q  356 agtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    ||||||||||||||||||||||| ||||  |||||||| ||||| |||||||||    
T  30817980 agtaaatccgcaagtgcacggttcaccgaagtagtaat-aaagagtatcgttcc 30818032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 18379516 - 18379568
Alignment:
Q  358 taaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| ||||||||||| |||| ||||||||||| ||||||||| |||||||||    
T  18379516 taaaaccgcaagtgcatggttctaccggtgtagaaataaaagagtatcgttcc 18379568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 350 - 409
Target Start/End: Original strand, 24392187 - 24392246
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||  ||||||||||    
T  24392187 tgatgtagtaaatccgcaagtgcacggtttaccgatgtagtaatcaaaagatatcgttcc 24392246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 29094327 - 29094276
Alignment:
Q  358 taaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||||||||||||||| ||||||| ||||||||||||||| |||||||||    
T  29094327 taaatccgcaagtgcacgatttaccgatgtagtaataaaagagtatcgttcc 29094276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 355 - 409
Target Start/End: Complemental strand, 26822638 - 26822585
Alignment:
Q  355 tagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||||||||||||||||| |||||||||||||||||| ||||| |||||||||    
T  26822638 tagtaaatccgcaagtgcacagtttaccggtgtagtaat-aaagagtatcgttcc 26822585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 358 - 408
Target Start/End: Original strand, 12656608 - 12656659
Alignment:
Q  358 taaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttc 408  Q
    |||| |||||||||||||||| ||||||||||||||||||||| ||||||||    
T  12656608 taaaaccgcaagtgcacggttctaccggtgtagtaataaaagagtatcgttc 12656659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 409
Target Start/End: Original strand, 28733434 - 28733493
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    ||||||||||||||||||||||| ||||||||||  ||||||| || ||| |||||||||    
T  28733434 tgatgtagtaaatccgcaagtgcgcggtttaccgaagtagtaaaaagagagtatcgttcc 28733493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 396
Target Start/End: Original strand, 12659740 - 12659786
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaa 396  Q
    ||||||||||| |||||||||||||||| ||||| ||||||||||||    
T  12659740 tgatgtagtaagtccgcaagtgcacggtctaccgatgtagtaataaa 12659786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 409
Target Start/End: Complemental strand, 17744239 - 17744193
Alignment:
Q  363 ccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    ||||||||||||| | ||||||||||||||||||||| |||||||||    
T  17744239 ccgcaagtgcacgttctaccggtgtagtaataaaagagtatcgttcc 17744193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 357 - 409
Target Start/End: Original strand, 19612037 - 19612089
Alignment:
Q  357 gtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||||||||||||||||||||||||  ||||||| || ||| |||||||||    
T  19612037 gtaaatccgcaagtgcacggtttaccgaagtagtaaaaagagagtatcgttcc 19612089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 409
Target Start/End: Original strand, 19569461 - 19569508
Alignment:
Q  363 ccgcaagtgcacggt-ttaccggtgtagtaataaaagaatatcgttcc 409  Q
    ||||||||||||||| ||||||  ||||||||||||||||||||||||    
T  19569461 ccgcaagtgcacggtcttaccgaagtagtaataaaagaatatcgttcc 19569508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 396
Target Start/End: Original strand, 23346481 - 23346520
Alignment:
Q  357 gtaaatccgcaagtgcacggtttaccggtgtagtaataaa 396  Q
    |||||| |||||||||||||||||||| ||||||||||||    
T  23346481 gtaaattcgcaagtgcacggtttaccgatgtagtaataaa 23346520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 408
Target Start/End: Original strand, 23509699 - 23509750
Alignment:
Q  357 gtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttc 408  Q
    |||||||||||||||||||||||||||  ||||||| || ||| ||||||||    
T  23509699 gtaaatccgcaagtgcacggtttaccgaagtagtaaaaagagagtatcgttc 23509750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 409
Target Start/End: Original strand, 25030432 - 25030490
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    ||||||||||||||||||||||||||||||| || | || |||||| ||| |||||||||    
T  25030432 tgatgtagtaaatccgcaagtgcacggtttatcgat-tattaataagagattatcgttcc 25030490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 409
Target Start/End: Complemental strand, 18628217 - 18628165
Alignment:
Q  357 gtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||||||||| ||||||||||||||  ||||||| || ||| |||||||||    
T  18628217 gtaaatccgcaaatgcacggtttaccgaagtagtaaaaagagagtatcgttcc 18628165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 410
Target Start/End: Complemental strand, 18974454 - 18974394
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcct 410  Q
    ||||||||||||||| ||| ||||| |||||||| ||||||||| |||  |||| ||||||    
T  18974454 tgatgtagtaaatcctcaattgcactgtttaccgatgtagtaatcaaaagatattgttcct 18974394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 393
Target Start/End: Original strand, 22032 - 22075
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaat 393  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  22032 tgatgtagtaaatccgcaagtgcacggtttaccgatgtagtaat 22075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 350 - 396
Target Start/End: Complemental strand, 24342675 - 24342629
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaa 396  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||    
T  24342675 tgatgtagtaaatccgcaagtgcatggtttaccagtgtagtaataaa 24342629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 23694567 - 23694515
Alignment:
Q  358 taaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| |||||||||||||||| ||||||||||||||||||||| |||||||||    
T  23694567 taaaaccgcaagtgcacggttctaccggtgtagtaataaaagagtatcgttcc 23694515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 409
Target Start/End: Complemental strand, 24059756 - 24059697
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    ||||||||||||||||||||||||||||||||||  ||||||| || ||| ||| |||||    
T  24059756 tgatgtagtaaatccgcaagtgcacggtttaccgaagtagtaaaaagagagtattgttcc 24059697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 358 - 408
Target Start/End: Complemental strand, 29004418 - 29004367
Alignment:
Q  358 taaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttc 408  Q
    |||| |||||||||||||||| ||||||||||||||||||||| ||||||||    
T  29004418 taaaaccgcaagtgcacggttataccggtgtagtaataaaagagtatcgttc 29004367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 409
Target Start/End: Original strand, 42417801 - 42417848
Alignment:
Q  363 ccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||    
T  42417801 ccgcaagtgcacggttctaccggtgtagtaataaaagagtatcgttcc 42417848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 392
Target Start/End: Original strand, 14155981 - 14156023
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaa 392  Q
    ||||||||||||||||||||||||||||||||||  |||||||    
T  14155981 tgatgtagtaaatccgcaagtgcacggtttaccgaagtagtaa 14156023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 18162810 - 18162758
Alignment:
Q  358 taaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| |||||||||||||||| ||||||||||||||||||||| ||| |||||    
T  18162810 taaaaccgcaagtgcacggttctaccggtgtagtaataaaagagtattgttcc 18162758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 26827258 - 26827206
Alignment:
Q  358 taaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| |||||||||||||||| |||| |||||||||||||||| |||||||||    
T  26827258 taaaaccgcaagtgcacggttctaccagtgtagtaataaaagagtatcgttcc 26827206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 409
Target Start/End: Original strand, 1989785 - 1989839
Alignment:
Q  356 agtaaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||| |||||||||||||||| |||||  |||||||||||||| |||||||||    
T  1989785 agtaaaaccgcaagtgcacggttctaccgaagtagtaataaaagagtatcgttcc 1989839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 6569915 - 6569967
Alignment:
Q  358 taaatccgcaagtgcacggt-ttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| ||||||||||||||| ||||||  |||||||||||||| |||||||||    
T  6569915 taaaaccgcaagtgcacggtcttaccgaagtagtaataaaagagtatcgttcc 6569967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 409
Target Start/End: Complemental strand, 18008894 - 18008837
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||||| ||||||||||||||||| |||||||  ||||||  |||||| |||||||||    
T  18008894 tgatgtagcaaatccgcaagtgcacgatttaccgaagtagta--aaaagagtatcgttcc 18008837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0443 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 393
Target Start/End: Original strand, 3795 - 3836
Alignment:
Q  352 atgtagtaaatccgcaagtgcacggtttaccggtgtagtaat 393  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  3795 atgtagtaaatccgcaagtgcacggtttaccgatgtagtaat 3836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 409
Target Start/End: Original strand, 23028886 - 23028946
Alignment:
Q  348 cgtgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||||  |||||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  23028886 cgtgatggggtaaatccgcaagtgcacggtttaccgaagtagtaataaaag-atatcgttcc 23028946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 409
Target Start/End: Complemental strand, 16677872 - 16677812
Alignment:
Q  349 gtgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    ||||||||||||||||| |||||||| |||||||  ||||||| ||||||| |||||||||    
T  16677872 gtgatgtagtaaatccgtaagtgcacagtttaccaatgtagtattaaaagagtatcgttcc 16677812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 18482985 - 18483037
Alignment:
Q  358 taaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| |||||||||||||||| ||||||||||||||||||||| |||||||||    
T  18482985 taaaaccgcaagtgcacggttctaccggtgtagtaataaaagagtatcgttcc 18483037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 20968523 - 20968471
Alignment:
Q  358 taaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| |||||||||||||||| ||||||||||||||||||||| |||||||||    
T  20968523 taaaaccgcaagtgcacggttctaccggtgtagtaataaaagagtatcgttcc 20968471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 409
Target Start/End: Complemental strand, 3388827 - 3388780
Alignment:
Q  363 ccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||    
T  3388827 ccgcaagtgcacggttctaccggtgtagtaataaaagagtatcgttcc 3388780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 19890526 - 19890475
Alignment:
Q  358 taaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    ||||||||||||||||||||||| ||  ||||||||||| || |||||||||    
T  19890526 taaatccgcaagtgcacggtttatcgaagtagtaataaacgagtatcgttcc 19890475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 409
Target Start/End: Complemental strand, 22171585 - 22171527
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||||||| ||| |||||||||||||||| || ||||||||| ||||| |||||||||    
T  22171585 tgatgtagtagatctgcaagtgcacggtttaacgatgtagtaat-aaagagtatcgttcc 22171527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 409
Target Start/End: Original strand, 20167484 - 20167538
Alignment:
Q  356 agtaaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||| |||||||||||||||| |||||  |||||||||||||| |||||||||    
T  20167484 agtaaaaccgcaagtgcacggttctaccgaagtagtaataaaagagtatcgttcc 20167538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 9728185 - 9728237
Alignment:
Q  358 taaatccgcaagtgcacggttt-accggtgtagtaataaaagaatatcgttcc 409  Q
    |||| ||||||||||||||||| ||||  |||||||||||||| |||||||||    
T  9728185 taaaaccgcaagtgcacggttttaccgaagtagtaataaaagagtatcgttcc 9728237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 409
Target Start/End: Complemental strand, 31904 - 31852
Alignment:
Q  357 gtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    ||||||||||||||| |||||||| || ||||||||||||||| |||||||||    
T  31904 gtaaatccgcaagtgtacggtttatcgatgtagtaataaaagattatcgttcc 31852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 11863 - 11915
Alignment:
Q  358 taaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| |||||||||||||||| ||||||||||||||||||||| |||||||||    
T  11863 taaaaccgcaagtgcacggttctaccggtgtagtaataaaagagtatcgttcc 11915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 18055 - 18107
Alignment:
Q  358 taaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| |||||||||||||||| ||||||||||||||||||||| |||||||||    
T  18055 taaaaccgcaagtgcacggttctaccggtgtagtaataaaagagtatcgttcc 18107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 11848176 - 11848216
Alignment:
Q  357 gtaaatccgcaagtgcacggtttaccggtgtagtaataaaa 397  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  11848176 gtaaatccgcaagtgcacggtttaccgatgtagtaataaaa 11848216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 392
Target Start/End: Original strand, 42243832 - 42243874
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaa 392  Q
    ||||||||||||||||||||||||||||||||||  |||||||    
T  42243832 tgatgtagtaaatccgcaagtgcacggtttaccgaagtagtaa 42243874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 365 - 408
Target Start/End: Complemental strand, 1991615 - 1991571
Alignment:
Q  365 gcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttc 408  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||    
T  1991615 gcaagtgcacggttctaccggtgtagtaataaaagagtatcgttc 1991571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 396
Target Start/End: Original strand, 11577054 - 11577093
Alignment:
Q  357 gtaaatccgcaagtgcacggtttaccggtgtagtaataaa 396  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  11577054 gtaaatccgtaagtgcacggtttaccgatgtagtaataaa 11577093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 407
Target Start/End: Original strand, 10850020 - 10850070
Alignment:
Q  358 taaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgtt 407  Q
    |||| |||||||||||||||| || |||||||||||||||||| |||||||    
T  10850020 taaaaccgcaagtgcacggttctatcggtgtagtaataaaagagtatcgtt 10850070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 396
Target Start/End: Complemental strand, 15494860 - 15494814
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaa 396  Q
    |||||||||||||||  |||||||||||||||||  |||||||||||    
T  15494860 tgatgtagtaaatccttaagtgcacggtttaccgaagtagtaataaa 15494814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 395
Target Start/End: Original strand, 9774377 - 9774422
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataa 395  Q
    |||||| |||||| | |||||||||||||||||| |||||||||||    
T  9774377 tgatgtcgtaaattcacaagtgcacggtttaccgctgtagtaataa 9774422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 2722751 - 2722699
Alignment:
Q  358 taaatccgcaagtgcacggt-ttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| ||||||||||||||| ||||||  |||||||||||||| |||||||||    
T  2722751 taaaaccgcaagtgcacggtcttaccgaagtagtaataaaagagtatcgttcc 2722699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 397
Target Start/End: Original strand, 8685141 - 8685189
Alignment:
Q  349 gtgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaa 397  Q
    ||||||||||||| ||||||||| ||||||||  | |||||||||||||    
T  8685141 gtgatgtagtaaacccgcaagtgtacggtttattgatgtagtaataaaa 8685189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 25055813 - 25055761
Alignment:
Q  358 taaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| |||||||||||||||| |||||  |||||||||||||| |||||||||    
T  25055813 taaaaccgcaagtgcacggttctaccgaagtagtaataaaagagtatcgttcc 25055761  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 50908199 - 50908251
Alignment:
Q  358 taaatccgcaagtgcacggt-ttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| ||||||||||||||| ||||||  |||||||||||||| |||||||||    
T  50908199 taaaaccgcaagtgcacggtcttaccgaagtagtaataaaagagtatcgttcc 50908251  T

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Target: scaffold0175 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 407
Target Start/End: Original strand, 11902 - 11952
Alignment:
Q  358 taaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgtt 407  Q
    |||| |||||||||||||||| ||||||||||||||||||||| |||||||    
T  11902 taaaaccgcaagtgcacggttctaccggtgtagtaataaaagagtatcgtt 11952  T

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Target: scaffold0213 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 395
Target Start/End: Complemental strand, 22377 - 22332
Alignment:
Q  350 tgatgtagtaaatccgcaagtgcacggtttaccggtgtagtaataa 395  Q
    |||| ||||||||||  |||||||||||||||||||||||||||||    
T  22377 tgatatagtaaatccataagtgcacggtttaccggtgtagtaataa 22332  T

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Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 352 - 409
Target Start/End: Complemental strand, 175696 - 175639
Alignment:
Q  352 atgtagtaaatccgcaagtgcacggtttaccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||||||||||||||||||||| |||||||  ||||||| || ||| |||||||||    
T  175696 atgtagtaaatccgcaagtgcacgatttaccgaagtagtaaaaagagagtatcgttcc 175639  T

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Target: scaffold0251 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 18215 - 18267
Alignment:
Q  358 taaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| |||||||||||||||| ||||||||| ||||||||||| |||||||||    
T  18215 taaaaccgcaagtgcacggttctaccggtgtggtaataaaagagtatcgttcc 18267  T

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Target: scaffold0142 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 24542 - 24594
Alignment:
Q  358 taaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| |||||| ||||||||| ||||||||||||||||||||| |||||||||    
T  24542 taaaaccgcaaatgcacggttctaccggtgtagtaataaaagagtatcgttcc 24594  T

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Target: scaffold0064 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 49598 - 49546
Alignment:
Q  358 taaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| |||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  49598 taaaaccgcaagtgcacagttctaccggtgtagtaataaaagagtatcgttcc 49546  T

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Target: scaffold0046 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 21263 - 21211
Alignment:
Q  358 taaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| |||||||||||||||| |||| |||||||||||||||| |||||||||    
T  21263 taaaaccgcaagtgcacggttctaccagtgtagtaataaaagagtatcgttcc 21211  T

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Target: scaffold0021 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 409
Target Start/End: Complemental strand, 100995 - 100941
Alignment:
Q  356 agtaaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    |||||| |||||||||||| ||| ||| ||||||||||||||||| |||||||||    
T  100995 agtaaaaccgcaagtgcacagttctactggtgtagtaataaaagagtatcgttcc 100941  T

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Target: scaffold0088 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 397
Target Start/End: Complemental strand, 39317 - 39280
Alignment:
Q  360 aatccgcaagtgcacggtttaccggtgtagtaataaaa 397  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  39317 aatccacaagtgcacggtttaccgatgtagtaataaaa 39280  T

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Target: scaffold0375 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0375
Description:

Target: scaffold0375; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 14231 - 14179
Alignment:
Q  358 taaatccgcaagtgcacggtt-taccggtgtagtaataaaagaatatcgttcc 409  Q
    |||| ||||||||||||| || ||||| ||||||||||||||| |||||||||    
T  14231 taaaaccgcaagtgcacgattctaccgatgtagtaataaaagagtatcgttcc 14179  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 186997 - 186945
Alignment:
Q  358 taaatccgcaagtgcacggttt-accggtgtagtaataaaagaatatcgttcc 409  Q
    |||| ||||||||||||||||| ||||  |||||||||||||| |||||||||    
T  186997 taaaaccgcaagtgcacggttttaccgaagtagtaataaaagagtatcgttcc 186945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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