View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_33 (Length: 416)
Name: NF12598_low_33
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 37078723 - 37079077
Alignment:
| Q |
19 |
catatggcttcagaacaacgcttagtttcacaaggtggaatgcagattggagaaatgctactgtcctttacgagcaagccggtatatatgcatttctaaa |
118 |
Q |
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| T |
37078723 |
catatggcttcagaacaacgcttagtttcacaaggtggaatgcagattggagaaatgctactgtcctctacgagcaagccggtatatatgcatttctaaa |
37078822 |
T |
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| Q |
119 |
tcattcattgtatacgcaaataaatactttcgtatcaaaatcaaagttgtaaatgaaaacaaacatgtgtttggataataaatctaccaagctcttgtta |
218 |
Q |
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| T |
37078823 |
tcattcattgtatacgcaaataaatacttttgtatcaaaatcaaagttgcaaatgaaaacaaacatgtgtttggataataaatctaccaatctcttgtta |
37078922 |
T |
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| Q |
219 |
ctatattgtagcaagtggatttaaaattgccaaagactacgagagagcaaaatcggcatatgagaaagcttcacagggacaagagatgctttcttcgtat |
318 |
Q |
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| T |
37078923 |
ctatattgtagcaagtggatttaaaattgccaaagactacgagagagcaaaatcggcatatgagaaagcttcacagggacaagagatgctttcttcgtat |
37079022 |
T |
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| Q |
319 |
ccttaactacgtattattctatttatcagaatcaacgaattaatgatcattatgt |
373 |
Q |
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| T |
37079023 |
ccttaactacgtattattctatttatcagaatcaacgaattaatgatcattatgt |
37079077 |
T |
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Back To:
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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 20664912 - 20664961
Alignment:
| Q |
274 |
gcatatgagaaagcttcacagggacaagagatgctttcttcgtatcctta |
323 |
Q |
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| T |
20664912 |
gcatatgagaaagcttcacaaggacagcaaatgctttcttcgtatcctta |
20664961 |
T |
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