View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_35 (Length: 411)
Name: NF12598_low_35
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 262 - 390
Target Start/End: Original strand, 40758315 - 40758443
Alignment:
| Q |
262 |
gagatctccgtcgattcctccgtttctcctttctctctccgcaccaggtatattctacccctcctctatctctctctatcgattcattcatcgtttaatt |
361 |
Q |
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| T |
40758315 |
gagatctccgtcgattcctccgtttctcctttctctctccgcaccaggtatattctacccctcctctatctctctctatcgattcattcatcggttaatt |
40758414 |
T |
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| Q |
362 |
gatatcaattcatttcagacctggtgctt |
390 |
Q |
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| T |
40758415 |
gatatcaattcatttcagacctggtgctt |
40758443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 40758092 - 40758216
Alignment:
| Q |
39 |
aaaatgagagtccaacaaccttcttcttctttctatagttagcttcatcttcccgcgtaaaacccaattctggtttagaacattttccatgacgacgtcg |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40758092 |
aaaatgagagtccaacaaccttcttcttctttctatagttagcttcatcttcccgcgtaaaacccaattctggtttagaacattttccatgacgacatcg |
40758191 |
T |
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| Q |
139 |
tttttcaacggcgagagactcatcg |
163 |
Q |
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| T |
40758192 |
tttttcaacggcgagagactcatcg |
40758216 |
T |
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