View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_37 (Length: 401)
Name: NF12598_low_37
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 131 - 378
Target Start/End: Complemental strand, 44985194 - 44984946
Alignment:
| Q |
131 |
aaatgtgatcatagagtgaattattaggtggtgagaaaattatgaaagatcaacttaaattagacacttccataaatttatgtagaattacttaatgaat |
230 |
Q |
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| T |
44985194 |
aaatgtgatcatagagtgaattattaggtggtgagaaaattatgaaagatcaacttaaattagacacttccataaatttatgtagaattacttaatgaat |
44985095 |
T |
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| Q |
231 |
ctcattagactttggtatatttattggcgcaagcgaaatatagagaagagaatannnnnnnnaagaagcataaagaagagaatattacctagcgaaaaaa |
330 |
Q |
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| T |
44985094 |
ctcattagactttggtatatttattggcgcaagcgaaatatagagaagagaata-tttttttaagaagcataaagaagagaatattacctagcgaaaaaa |
44984996 |
T |
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| Q |
331 |
ggaaaggtgagtccactaaaacg--atatatatggaatgcagttttccca |
378 |
Q |
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| T |
44984995 |
ggaaaggtgagtccactaaaacgatatatatatggaatgcagttttccca |
44984946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 44985306 - 44985240
Alignment:
| Q |
18 |
attacgactcattataacaaatgaactaatttgtcactatataaaaatgtcaatgattaatttaagt |
84 |
Q |
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| T |
44985306 |
attacgactcattataataaatgaactaatttgtcaccgtaaaaaaatgacaatgattaatttaagt |
44985240 |
T |
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