View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12598_low_38 (Length: 401)

Name: NF12598_low_38
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12598_low_38
NF12598_low_38
[»] chr3 (5 HSPs)
chr3 (6-400)||(43201738-43202135)
chr3 (12-200)||(28592604-28592792)
chr3 (92-204)||(13477077-13477189)
chr3 (98-203)||(51469206-51469311)
chr3 (176-204)||(37987253-37987281)
[»] chr7 (2 HSPs)
chr7 (6-204)||(48717312-48717507)
chr7 (152-204)||(48718172-48718224)
[»] chr8 (2 HSPs)
chr8 (57-209)||(14753938-14754086)
chr8 (92-193)||(3043273-3043374)
[»] scaffold0022 (1 HSPs)
scaffold0022 (74-156)||(148442-148523)
[»] chr4 (2 HSPs)
chr4 (74-156)||(12919653-12919734)
chr4 (176-204)||(40496081-40496109)
[»] chr1 (2 HSPs)
chr1 (71-195)||(25084536-25084659)
chr1 (177-205)||(37576942-37576970)
[»] chr5 (1 HSPs)
chr5 (93-204)||(33470400-33470511)
[»] chr2 (1 HSPs)
chr2 (133-180)||(45632494-45632541)
[»] scaffold0418 (1 HSPs)
scaffold0418 (176-204)||(5925-5953)


Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 6 - 400
Target Start/End: Complemental strand, 43202135 - 43201738
Alignment:
Q  6 gtagcaaagggatgatcaattatgtaatttgtctgcaagaagaacataaacatgagtcccttcaagaagaagaaga---tgagagcagcgatatgttttt 102  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||   |||||||||||||||||||||    
T  43202135 gtagcaaatggatgatcaattatgtaatttgtctgcaagaagaacataaacgtgaatcccttcaagaagaagaagaagatgagagcagcgatatgttttt 43202036  T
Q  103 ctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtcaacgaatccattgaca 202  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| || |||| || ||||||||||||||||| ||||||||||||| ||||||||||||    
T  43202035 ctttgaagagtcctcacataaacaattagctgaataaatgagagtcactaagtttaaaataaaggacggctatgatttggtgtcaacaaatccattgaca 43201936  T
Q  203 ccgagtgacccaaactcttaatatattaacacaaacatactcaatttattggtattgataatatatagatttagaagtacagaaagagtgccaaaaaggt 302  Q
    |||| ||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43201935 ccgaatgatcctaactcctaatatattaacacaaacatactcaatttattggtattgataatatatatatttagaagtacagaaagagtgccaaaaaggt 43201836  T
Q  303 agacctgtcctccagctacctcactaagaagcaagaaccacatgcatggatgcaattgaatcagaaaactattaagcaagtcaacaacatttaagaac 400  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||    
T  43201835 agacctgtcctccagctacctcaataagaagcaagaaccacatgcatggatgcaattgaatcagaaaactattaagaaagtcaatcacatttaagaac 43201738  T

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Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 28592604 - 28592792
Alignment:
Q  12 aagggatgatcaattatgtaatttgtctgcaagaagaacataaacatgagtcccttcaagaagaagaagatgagagcagcg------atatgtttttctt 105  Q
    ||||||||||| ||| |||||||||||||    ||||||||||||||||||| ||||||||||||||   |||||||| ||      ||||| |||||||    
T  28592604 aagggatgatcgattgtgtaatttgtctg----aagaacataaacatgagtcacttcaagaagaaga---tgagagcaacgtggtatatatgcttttctt 28592696  T
Q  106 tgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtc-aacgaatccattga 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||| |||||||||| ||||||||||||||    
T  28592697 tgaagagtccccacgtgaacaattagctgaataaatgagagccattaagattaaaataaatgacggttatgatttggtgtcaaacgaatccattga 28592792  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 92 - 204
Target Start/End: Complemental strand, 13477189 - 13477077
Alignment:
Q  92 gatatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtcaacga 191  Q
    |||||||||||||||||||||||||||||| ||||||||  |||||||||| |||||||||||||  |||||||| | || ||  |||||||||||| ||    
T  13477189 gatatgtttttctttgaagagtccccacattaacaattaagtgaataaatgggagccattaagatcaaaataaagaatggttaggatttggtgtcaatga 13477090  T
Q  192 atccattgacacc 204  Q
    || | ||||||||    
T  13477089 attcgttgacacc 13477077  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 51469206 - 51469311
Alignment:
Q  98 tttttctttgaagagtccccacatgaacaa-ttagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtcaacgaatcca 196  Q
    |||||||||||||||| ||||| ||||||| || || ||||||||| |||||||||||||| ||| |||| | |||||  |||||||||||||||||||     
T  51469206 tttttctttgaagagttcccacgtgaacaagttcgc-gaataaatgtgagccattaagattaaaacaaagaatggctaagatttggtgtcaacgaatccg 51469304  T
Q  197 ttgacac 203  Q
    |||||||    
T  51469305 ttgacac 51469311  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 37987281 - 37987253
Alignment:
Q  176 aatttggtgtcaacgaatccattgacacc 204  Q
    |||||||||||||||||||||||||||||    
T  37987281 aatttggtgtcaacgaatccattgacacc 37987253  T

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Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 6 - 204
Target Start/End: Complemental strand, 48717507 - 48717312
Alignment:
Q  6 gtagcaaagggatgatcaattatgtaatttgtctgcaagaagaacataaacatgagtcccttcaagaagaagaagatgagagcagcgatatgtttttctt 105  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||||    
T  48717507 gtagcaaatggatgatcaattatgtaatttgtctgcaagaagaacataaacatgagtcccttcaagaagaaga---tgagaacagcgatatgtttttctt 48717411  T
Q  106 tgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtcaacgaatccattgacacc 204  Q
    | |||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||| | |||||||||||||| |||||||||||    
T  48717410 tcaagagtccccacatgaacaattagctgaataaatgagagccactaagattaaaatgaaggacggctatgagttggtgtcaacgaacccattgacacc 48717312  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 48718172 - 48718224
Alignment:
Q  152 aagattgaaataaaggacggctataatttggtgtcaacgaatccattgacacc 204  Q
    |||||| ||||||| ||||||||| |||||||||||||| |||||||||||||    
T  48718172 aagattaaaataaacgacggctatgatttggtgtcaacggatccattgacacc 48718224  T

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Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 57 - 209
Target Start/End: Original strand, 14753938 - 14754086
Alignment:
Q  57 atgagtcccttcaagaagaagaagatgagagcagcgatatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagat 156  Q
    |||||| ||||||||||||||| || ||| ||||   |||||||||||||||||||||||||| ||||||| |   |||||||||| |||||||||||||    
T  14753938 atgagtgccttcaagaagaagatga-gagggcag---tatgtttttctttgaagagtccccacgtgaacaaattcgtgaataaatgtgagccattaagat 14754033  T
Q  157 tgaaataaaggacggctataatttggtgtcaacgaatccattgacaccgagtg 209  Q
    | ||| |||| |||||||  |||| |||||||| ||||| |||||||| ||||    
T  14754034 taaaacaaagaacggctaggatttagtgtcaacaaatccgttgacacctagtg 14754086  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 92 - 193
Target Start/End: Complemental strand, 3043374 - 3043273
Alignment:
Q  92 gatatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtcaacga 191  Q
    |||||||||||||||||||||||||||||| ||||||||  |||||||||| |||||||||||||  |||||||| | || ||  |||||||||||| ||    
T  3043374 gatatgtttttctttgaagagtccccacattaacaattaagtgaataaatgggagccattaagatcaaaataaagaatggttaggatttggtgtcaatga 3043275  T
Q  192 at 193  Q
    ||    
T  3043274 at 3043273  T

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Target: scaffold0022 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 148523 - 148442
Alignment:
Q  74 gaagaagatgagagcagcgatatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagat 156  Q
    ||||||||||||||  | |||||||||||||||||||||||||||| |||||||| |  |||||||||| |||||||||||||    
T  148523 gaagaagatgagagt-gtgatatgtttttctttgaagagtccccacctgaacaatcaagtgaataaatgtgagccattaagat 148442  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 12919734 - 12919653
Alignment:
Q  74 gaagaagatgagagcagcgatatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagat 156  Q
    ||||||||||||||  | |||||||||||||||||||||||||||| | || |||||  |||||||||| || ||||||||||    
T  12919734 gaagaagatgagagt-gtgatatgtttttctttgaagagtccccacgttaataattaattgaataaatgtgaaccattaagat 12919653  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 40496081 - 40496109
Alignment:
Q  176 aatttggtgtcaacgaatccattgacacc 204  Q
    |||||||||||||||||||||||||||||    
T  40496081 aatttggtgtcaacgaatccattgacacc 40496109  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 71 - 195
Target Start/End: Complemental strand, 25084659 - 25084536
Alignment:
Q  71 gaagaagaagatgagagcagcgatatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacg 170  Q
    |||||||||||||||||  | |||||||||||||||||||||||| ||| | |||||| |  | |||||||| | |||||||||||  ||| |||| | |    
T  25084659 gaagaagaagatgagagt-gtgatatgtttttctttgaagagtccacaccttaacaatcaagtaaataaatgtgggccattaagatcaaaacaaagaatg 25084561  T
Q  171 gctataatttggtgtcaacgaatcc 195  Q
    | ||  |||||||||||||| ||||    
T  25084560 gttaggatttggtgtcaacggatcc 25084536  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 37576970 - 37576942
Alignment:
Q  177 atttggtgtcaacgaatccattgacaccg 205  Q
    |||||||||||||||||||||||||||||    
T  37576970 atttggtgtcaacgaatccattgacaccg 37576942  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 204
Target Start/End: Complemental strand, 33470511 - 33470400
Alignment:
Q  93 atatgtttttctttgaagagtccccacatgaacaattagctgaataaatgagagccattaagattgaaataaaggacggctataatttggtgtcaacgaa 192  Q
    |||||||||||||| ||||||| |||  | ||||||||  |||||||||| |||||||||||||  |||||||| | || |   ||||||||||||| ||    
T  33470511 atatgtttttctttaaagagtctccatgttaacaattaagtgaataaatgggagccattaagatcaaaataaagaatggtttggatttggtgtcaacaaa 33470412  T
Q  193 tccattgacacc 204  Q
    | | ||||||||    
T  33470411 ttcgttgacacc 33470400  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 45632541 - 45632494
Alignment:
Q  133 tgaataaatgagagccattaagattgaaataaaggacggctataattt 180  Q
    ||||||||||| ||||| ||||||| ||||||||||||||||| ||||    
T  45632541 tgaataaatgatagccactaagattaaaataaaggacggctatgattt 45632494  T

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Target: scaffold0418 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 5953 - 5925
Alignment:
Q  176 aatttggtgtcaacgaatccattgacacc 204  Q
    |||||||||||||||||||||||||||||    
T  5953 aatttggtgtcaacgaatccattgacacc 5925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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