View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_39 (Length: 399)
Name: NF12598_low_39
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 171832 - 171444
Alignment:
| Q |
1 |
agcagcttcctctttcaaattcatattgcgcgacgatccatatgcacttggatgcattgactggcccgaatgagagaagatattacgtgatcttaacttt |
100 |
Q |
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| T |
171832 |
agcagcttcctctttcaaattcatatcgcgcgacgatccatatgcacttggatgcattgactggcccgaatgagagaagatattacgtgatcttaacttt |
171733 |
T |
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| Q |
101 |
gcaggttcaagagggaagccataacctccttcctcttcaggattgtacttctcactaatgcattttgaattacactgcccttgtctcttctgcagg-nnn |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
171732 |
gcaggttcaagagggaagccataacctccttcctcttcaggattgtacttctcactaatgcattttgaattacactgcccttgtctcttctgcaggaaaa |
171633 |
T |
|
| Q |
200 |
nnnnnntcacatggaaaatgatgaatcaggcaaatccaaacaattctagcaaagaagtttcattaacactatctttatgatttaaagtacctctattgat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
171632 |
aaaaaatcacatggaaaatgatgaatcaggcaaatccaaacaattctagcaaagaagtttcattaacactatctttatgatttaaagtacctctattgat |
171533 |
T |
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| Q |
300 |
gactgaatctcaacattagcatcaggtgctggcacaactttagactctttaaaattccatccaactgattcctgtcttacatgtccttt |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
171532 |
gactgaatctcaacattagcatcaggtgctggcacaactttagactctttaaaattccatccaactgattcctgtcttacatgtccttt |
171444 |
T |
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