View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12598_low_4 (Length: 655)
Name: NF12598_low_4
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 170 - 642
Target Start/End: Complemental strand, 55342887 - 55342412
Alignment:
| Q |
170 |
ttaaaatattctcgtatctaattgtaaagactaattttcatacgcaattgcaaagactaatattctttcaaagtaattgagatccatttagatgattaat |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55342887 |
ttaaaatattctcgtatctaattgtaaagactaattctcatacgcaattgcaaagactaatattctttcaaagtaattgagatccatttagatgattaat |
55342788 |
T |
|
| Q |
270 |
cttttttaacag------gtcagatatcaaactcctcacgaaatatatagttaaatgactcaaatgatatatctactatatttgcaacaccatgttggtg |
363 |
Q |
| |
|
||||||||||| |||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
55342787 |
cttttttaacatacacgagtcagaaatcaaactcctcccaaaatatatagttaaatgactcaaatgatatatcta-------tgcaacaccatgttggtg |
55342695 |
T |
|
| Q |
364 |
aaatcatcctctacttaatttgcactatatata----gatgctcaattgggtagggacaaaacgagaagcaaacaccaatccatataaatcaagtttgaa |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55342694 |
aaatcatcctctacttaatttgcactatatatatatagatgctcaattggatagggacaaaacgagaagcaaacaccaatccatataaatcaagtttgaa |
55342595 |
T |
|
| Q |
460 |
tcactcctatatttaactatagaatggatgaggttgcggtcaagccaacaattgacataattgtgtgtgctaccacaaacaatactactaatgctaaacc |
559 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55342594 |
tcactcctatatttaactatagaatgggtgaggttgcggtcaagccaacaattgacataattgtgtgtgctaccacaaacaatactactaatgctaaacc |
55342495 |
T |
|
| Q |
560 |
aatcaccaagccatcacattcacagtcacaaccattcttaactaagatccatgcaggctactttttcatttgtgtttcctttg |
642 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55342494 |
aatcaccaagccatcacattcacagtcacaaccattcttaactaagatccatgcaggctactttttcatttgtgtttcctttg |
55342412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 55343048 - 55342917
Alignment:
| Q |
18 |
atacgcaccattgatcatttaa-tttaagatgcaccatagaaaatttttaagtaaatttgctcatattttacttttgaggaatgcttttcttattttaaa |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55343048 |
atacgcaccattgatcatttaaatttaagatgcaccatagaaaaatttaaagtaaatttgctcatattttacttttgaggaatgcttttcttattttaaa |
55342949 |
T |
|
| Q |
117 |
ttcaaaatcaatgtctcttgattgcatagtca |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
55342948 |
ttcaaaatcaatgtctcttgattgcatagtca |
55342917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University