View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_40 (Length: 385)
Name: NF12598_low_40
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 32 - 372
Target Start/End: Original strand, 16972659 - 16973003
Alignment:
| Q |
32 |
tggccttggaagatacaatccaacaaccgatagtgcatgt----ccatgagatttgtcaattgtcatgccaaaagaatgaatattgaaaattgtcttctt |
127 |
Q |
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| T |
16972659 |
tggccttggaagatacaatccaacaactgatagtgcatgcatgcccatgagatttgtcaattgtcattccaaaagaatgaatattgaaaattgtcttctt |
16972758 |
T |
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| Q |
128 |
ttaaacttaaatggcagattaagattgtatgtaatcatgcccatccagggaagaagaacaatgttcccaannnnnnncctagtcaatgatatcgtccata |
227 |
Q |
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| T |
16972759 |
ttaaacttaaatggcagattaaggttgcatgtaatcatgcccatccagggaagaagaacaatgttcccaatttttttcctagtcaatgatgtcgtccata |
16972858 |
T |
|
| Q |
228 |
tttctctgtaagcctaaccaaacaattcttaaatggacatccacgatcagaccatcataatttagagcatgtgtctttcacaataccatattcaaaggta |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
16972859 |
tttctctgtaagcctaaccaaacaattcttaaatggacattcacgatcagaccatcataatttagagcatgtgtctttcacaataccatattcaaagata |
16972958 |
T |
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| Q |
328 |
tgttgttacgtacaaaattacatattttccctgcaatgtgcacct |
372 |
Q |
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| T |
16972959 |
tgttgttacgtacaaaattacatattttccctgcaatgtgcacct |
16973003 |
T |
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