View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12598_low_41 (Length: 382)
Name: NF12598_low_41
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_41 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 11 - 380
Target Start/End: Complemental strand, 33793622 - 33793251
Alignment:
| Q |
11 |
cagagatgatatagatcattcttgtggccttggaaattatatcttttggattgtaccaattggtggtggcttgtgaatctaatggtatgaaggatatgca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33793622 |
cagagatgatatagatcattcttgtggccttggaaattatatcttttggattgtaccaattggtggtggcttgtgaatctaatggtatgaagaatatgca |
33793523 |
T |
|
| Q |
111 |
gacttaataatagagacgtgagtttactcgtagaggaagagagact--atacttcttaatgacggcaagataaaataggaagctaaaacattgatcctaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33793522 |
gacttaataatagagacgtgagtttactcgtagaggaagagagactgtatacttcttaatgacggcaagataaaataggaagctaaaacattgatcctaa |
33793423 |
T |
|
| Q |
209 |
ttgattaagaaccaattcctggtaattgaataagattcaatgaatttcttgcggcgatagagcataacacaatttcaactaagaggggaagaattaaaga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33793422 |
ttgattaagaaccaattcctggtaattgaataagattcaatgaatttcttgcggcgatagagcataacacaatttcaactaagaggggaagaattaaaga |
33793323 |
T |
|
| Q |
309 |
atattcattcttttggttttatagaggaattagtttgaatgacattccatgagagaagaagacgtgaagtag |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33793322 |
atattcattcttttggttttatagaggaattagtttgaatgacattccatgagagaagaagacgtgaagtag |
33793251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 8311589 - 8311715
Alignment:
| Q |
9 |
agcagagatgatatagatcattcttgtggccttggaaattatatcttttggattgtaccaattggtggtggcttgtgaatctaatggtatgaaggatatg |
108 |
Q |
| |
|
||||||||||||| |||| |||||||||||||| ||||| ||| | ||||||| ||| |||||||||| ||| ||||||||| ||||||||||| ||||| |
|
|
| T |
8311589 |
agcagagatgataaagattattcttgtggccttagaaataataccctttggatggtagcaattggtggaggcgtgtgaatctgatggtatgaagaatatg |
8311688 |
T |
|
| Q |
109 |
cagacttaataatagagacgtgagttt |
135 |
Q |
| |
|
|||||||||| |||||| ||||||||| |
|
|
| T |
8311689 |
cagacttaatgatagaggcgtgagttt |
8311715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University