View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_43 (Length: 376)
Name: NF12598_low_43
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 35019557 - 35019922
Alignment:
| Q |
1 |
tttctcttccttctatttcgtctacatagaagccgcatagcttcaaagacaccaccggaagccggcggatcttggccgttaatcggccacctcaacctct |
100 |
Q |
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| T |
35019557 |
tttctcttccttctatttcgcctacatagaagccgcatagcttcaaagacaccaccggaagccggcggatcatggccgttaatcggccacctccacctct |
35019656 |
T |
|
| Q |
101 |
taggtggttcacaaccacctcacgttaccttaggaaacttagccgacaaatacggacccatcttcaccgttcgtttaggtgttcacaaaaccttagtagt |
200 |
Q |
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| T |
35019657 |
taggtggttcccaaccacctcacgtcaccttaggaaacttagccgacaaatacggacccatcttcaccgttcgtttaggtgttcacaaaaccttagtagt |
35019756 |
T |
|
| Q |
201 |
aagcagttatgaaatggtgaaacagtgttttaccgtaaacgacaaaacttttgcttcacgtcctaaatctatagcctttgaaatcatgggttataacttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
35019757 |
aagcagttatgaaatggtgaaacagtgttttaccgtaaacgacaaaacttttgcttcacgtcctaaatctatagcctttgaaatcatgggttataactct |
35019856 |
T |
|
| Q |
301 |
tccatgtttggtttgagtccttatggttcttattggcgtaccgtgcgtaaaattgcccctgttcat |
366 |
Q |
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| T |
35019857 |
tccatgtttggtttgagtccttatggttcttattggcgtaccgtgcgtaaaattgccactgttcat |
35019922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 35029639 - 35030001
Alignment:
| Q |
1 |
tttctcttccttctatttcgtctacatagaagccgcatagcttcaaagacaccaccg---------gaagccggcggatcttggccgttaatcggccacc |
91 |
Q |
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| T |
35029639 |
tttctcttccttctctttcgtctacatagaagccggatggcttcaaagacaccaccaccgccgccagaagccagcggagcatggccgttaattggccacc |
35029738 |
T |
|
| Q |
92 |
tcaacctcttaggtggttcacaaccacctcacgttaccttaggaaacttagccgacaaatacggacccatc-ttcaccgttcgtttaggtgttcacaaaa |
190 |
Q |
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|| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35029739 |
tccacctcttaggtgggtcccaaccacctcacgttaccttaggaaacttagccgacaaatacggacccatccttcaccgttcgtttaggtgttcacaaaa |
35029838 |
T |
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| Q |
191 |
ccttagtagtaagcagttatgaaatggtgaaacagtgttttaccgtaaacgacaaaacttttgcttcacgtcctaaatctatagcctttgaaatcatggg |
290 |
Q |
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||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||| |||||||||||| | || |
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| T |
35029839 |
ccttagttgtaagcagttatgaaatggtgaaacaatgtttcaccgtaaatgacaaaacttttgcttcacgtccgaaatctgcagcctttgaaattttagg |
35029938 |
T |
|
| Q |
291 |
ttataacttttccatgtttggtttgagtccttatggttcttattggcgtaccgtgcgtaaaat |
353 |
Q |
| |
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| T |
35029939 |
gtataacttttccatgataggtttcagtccttatggttcttattggcgtacagtgcgtaaaat |
35030001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 71 - 350
Target Start/End: Original strand, 35035826 - 35036105
Alignment:
| Q |
71 |
cttggccgttaatcggccacctcaacctcttaggtggttcacaaccacctcacgttaccttaggaaacttagccgacaaatacggacccatcttcaccgt |
170 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||||||| |||| |||| | | ||||| |||||||||||||||||||||||| |||||||||| || |
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| T |
35035826 |
cttggcctttaatcggccacctccacctcttaggtggttcccaacaaccttatatcaccttgggaaacttagccgacaaatacggagccatcttcacagt |
35035925 |
T |
|
| Q |
171 |
tcgtttaggtgttcacaaaaccttagtagtaagcagttatgaaatggtgaaacagtgttttaccgtaaacgacaaaacttttgcttcacgtcctaaatct |
270 |
Q |
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|||||||||||||| ||| ||||| || ||||||| ||||| | | ||||||||| || |||||||||||| | |||||||| ||||| |||||| |
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| T |
35035926 |
gcgtttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgtttcactgtaaacgacaaagcctttgcttctcgtcccaaatct |
35036025 |
T |
|
| Q |
271 |
atagcctttgaaatcatgggttataacttttccatgtttggtttgagtccttatggttcttattggcgtaccgtgcgtaa |
350 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||| || ||||||||||||||||| ||||||| |
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| T |
35036026 |
atagcctttgaaatcatgggttataactcttccatgtttggtatgagtccctacggttcttattggcgtacattgcgtaa |
35036105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 58 - 350
Target Start/End: Original strand, 35043974 - 35044266
Alignment:
| Q |
58 |
gaagccggcggatcttggccgttaatcggccacctcaacctcttaggtggttcacaaccacctcacgttaccttaggaaacttagccgacaaatacggac |
157 |
Q |
| |
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|||||||| ||| ||||||| || |||||||||||| ||||||||||||| || || |||||||| || |||||||| || ||||||| |||||||||| |
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| T |
35043974 |
gaagccggtggagcttggcctttgatcggccacctccacctcttaggtggatcccagccacctcatgtcaccttagggaagctagccgataaatacggac |
35044073 |
T |
|
| Q |
158 |
ccatcttcaccgttcgtttaggtgttcacaaaaccttagtagtaagcagttatgaaatggtgaaacagtgttttaccgtaaacgacaaaacttttgcttc |
257 |
Q |
| |
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| ||||||||| ||||||| |||||||||||||| |||| ||||||||| |||||||| |||||| || || || |||||||| | | | |||||||| |
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| T |
35044074 |
ctatcttcacctttcgttttggtgttcacaaaacactagttataagcagttgtgaaatggcgaaacaatgcttcactgtaaacgatagagcctttgcttc |
35044173 |
T |
|
| Q |
258 |
acgtcctaaatctatagcctttgaaatcatgggttataacttttccatgtttggtttgagtccttatggttcttattggcgtaccgtgcgtaa |
350 |
Q |
| |
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||||| |||||||||||||||||||| |||| ||||||||||||||| | ||||| |||||||| ||||| |||||||| || |||||||| |
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| T |
35044174 |
tcgtcccaaatctatagcctttgaaattttgggatataacttttccatgataggtttcagtccttacggttcctattggcgcacagtgcgtaa |
35044266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 22061944 - 22061990
Alignment:
| Q |
127 |
accttaggaaacttagccgacaaatacggacccatcttcaccgttcg |
173 |
Q |
| |
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||||||||| |||||||||| ||||||||||| ||||||||| |||| |
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| T |
22061944 |
accttaggagacttagccgataaatacggaccaatcttcacccttcg |
22061990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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