View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_46 (Length: 370)
Name: NF12598_low_46
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_46 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 6 - 182
Target Start/End: Original strand, 29323385 - 29323561
Alignment:
| Q |
6 |
agaagcaaagggttgaatggatttagtgaggtattgtgatgataagacccatgaaatcacttgtaaatattgctataatgagaatcgaaaagttgaaatg |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29323385 |
agaatcaaaaggttgaatggatttagtgaggtattgtgatgataagacccatgaaatcacttctaaatattgctataatgagaatcgaaaagttgaaatg |
29323484 |
T |
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| Q |
106 |
gattggttttagcatctacatgtctttgatttggtaagaaaatggtatggaagtggtgatttatgacttactaagaa |
182 |
Q |
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| T |
29323485 |
gattggttttagcatctacatgtctttgatttagtaagaaaatggtatggcaatggagatttatgacttactgagaa |
29323561 |
T |
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Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 29134855 - 29134672
Alignment:
| Q |
16 |
ggttgaatggatttagtgaggtattgtgatgataagacccatgaaatcacttgtaaatattgctataatgagaatcgaaaagttgaaatggattggtttt |
115 |
Q |
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| T |
29134855 |
ggttgaatggatttagtgagggattgtgatgataatacccatgaaatcagttctaaatattgttataatgagaatcgaaaaattgaaatggatgagtttt |
29134756 |
T |
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| Q |
116 |
agcatctacatgtctttgatttggtaagaaaatggtatggaagtggtgatttatgacttac--taagaataaggatgaacttta |
197 |
Q |
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| T |
29134755 |
agcatctacatgtctttgatttagtaagaaaagggtatggaagtggaaatttatgacttactgtgagaataacgatgaacttta |
29134672 |
T |
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Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 28001322 - 28001164
Alignment:
| Q |
16 |
ggttgaatggatttagtgaggtattgtgatgataagacccatgaaatcacttgtaaatattgctataatgagaatcgaaaagttgaaatggattggtttt |
115 |
Q |
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| T |
28001322 |
ggttgaatggatttagtgagggattgtgatgataatacccatgaaatcagttctaaatattgttaaaatgagaatcgaaaaattaaaatggatgagtttt |
28001223 |
T |
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| Q |
116 |
agcatctacatgtctttgatttggtaagaaaatggtatggaagtggtgatttatgactt |
174 |
Q |
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| T |
28001222 |
agcatctacatgtctttgatttagtaagaaaagggtatggaagtggaaatttatgactt |
28001164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 28001167 - 28001092
Alignment:
| Q |
192 |
actttacgaaggcatgtagcatatgtcttggatcaaaatggtgctctaaagaagttggtgttttgtgggttaatat |
267 |
Q |
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| T |
28001167 |
actttacgaaggcgggttgcatatgccttggatcaaaatggcgctttaaagaaattggtgttttatgggttaatat |
28001092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 267525 - 267591
Alignment:
| Q |
16 |
ggttgaatggatttagtgaggtattgtgatgataagacccatgaaatcacttgtaaatattgctata |
82 |
Q |
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| T |
267525 |
ggttgaatggatttagtgagggattgtgatgataatacccatgaaatcagttctaaatattgttata |
267591 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 43469152 - 43469193
Alignment:
| Q |
18 |
ttgaatggatttagtgaggtattgtgatgataagacccatga |
59 |
Q |
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| T |
43469152 |
ttgaatggatttagtgagtgattgtgatgataatacccatga |
43469193 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 10645658 - 10645698
Alignment:
| Q |
18 |
ttgaatggatttagtgaggtattgtgatgataagacccatg |
58 |
Q |
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| T |
10645658 |
ttgaatggatttagtgagtgattgtgatgataatacccatg |
10645698 |
T |
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