View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12598_low_48 (Length: 360)
Name: NF12598_low_48
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_48 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 43201359 - 43201615
Alignment:
| Q |
16 |
cagaagaagaaaggaaaatattggtagaaaatataagtgtacttaaaaggcaaggtatatacaaaggacataattgtccacctannnnnnnaaagtaaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43201359 |
cagaagaagaaaggaaaatattggtagaaaatataagtgtacttaaaaggcaaggtatatacaaaggacataattgtccacctatttttttaaagtaaaa |
43201458 |
T |
|
| Q |
116 |
gaaatagtattcaatagacaagaataggattgttgtgctgtaatatacctagaaagaaagcgtgtgagaaattaaagagtaatatttagaagaaaaagat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43201459 |
gaaatagtattcaatagacaagaataggattgttgtgctgtaatatacctagaaagaaagcgtgtgagaaattaaagagtggtatttagaagaaaaagat |
43201558 |
T |
|
| Q |
216 |
aattgtttttcttgtacgaggattttctgaactataaatattgactactagctaatt |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43201559 |
aattgtttttcttgtacgaggattttctgaactataaatattgactactagctaatt |
43201615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 287 - 360
Target Start/End: Original strand, 43201685 - 43201758
Alignment:
| Q |
287 |
tatttgtttgtgaggtataaatgccagctcaatgagtagttactcacgtgtgagttcttaaatgtgattgactt |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43201685 |
tatttgtttgtgaggtataaatgccagctcaatgagtagttactcacgtgtgagttcttaaatgtgattgactt |
43201758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University