View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_50 (Length: 350)
Name: NF12598_low_50
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 46828314 - 46828639
Alignment:
| Q |
18 |
acttaggtcccctataaggaaaaatggttcatcacatgcatggcaagaataccataaattataagatgactaatatatataaatgttaataactactaca |
117 |
Q |
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| T |
46828314 |
acttaggtcccctataaggaaaaatggttcatcacatgcatggcaagaataccataaattataagatgactaatatatataaatgttaataactactaca |
46828413 |
T |
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| Q |
118 |
atcatatgcggtgtgaatttaatttggggcacgggttattcgtgtatcttcattcctccttggtatattttcctttcacgtagtaatggcttttaggtag |
217 |
Q |
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| T |
46828414 |
atcatatgcggtgtgaatttaatttggggcacgggttattcgtgtatcttcattcctccttggtatattttcctttcacgtagtaatggcttttaggtag |
46828513 |
T |
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| Q |
218 |
caatttattgctttgtaatttcttgtgctggaagatggatgagaaaaacataatcaatataatactctcctcaaaaagaataatcatccatggcagagtt |
317 |
Q |
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| T |
46828514 |
caatttattgctttgtaatttcttgtgctggaagatggatgagaaaaacataatcaatataatactctcctcaaaaagaataatcatccatggcagagtt |
46828613 |
T |
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| Q |
318 |
tacaatgctgcatgctgcctatgctt |
343 |
Q |
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| T |
46828614 |
tacaatgctgcatgctgcttatgctt |
46828639 |
T |
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