View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_54 (Length: 339)
Name: NF12598_low_54
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 35311501 - 35311814
Alignment:
| Q |
16 |
tcagtttcaccatagcagcagcaaagtctgtagaaaaagcagcctcattggtactgtaactcctaaccaaatcatcttgagacccattattgaaaagaac |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || |
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| T |
35311501 |
tcagtttcaccatagcagcagcaaagtctgtagaaaaagcagcctcattggtactataactcctaaccaaattatcttgagacccattattgaaaaggac |
35311600 |
T |
|
| Q |
116 |
ttgatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgtcaaaacttgttggagtgagagtatcaagtggtgctaaattggtg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35311601 |
ttgatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgtcaaaacttgttggagtgagagtatcaagtggtgctaaattggtg |
35311700 |
T |
|
| Q |
216 |
tcattatcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctgaacgatcggcact |
315 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
35311701 |
tcattgtcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctgaacaatcgacact |
35311800 |
T |
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| Q |
316 |
ctccttggcctatg |
329 |
Q |
| |
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|||||||||||||| |
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| T |
35311801 |
ctccttggcctatg |
35311814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 35307158 - 35307468
Alignment:
| Q |
16 |
tcagtttcaccatagcagcagcaaagtctgtagaaaaagcagcctcattggtactgtaactcctaaccaaatcatcttgagacccattattgaaaagaac |
115 |
Q |
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||||||||||||||||| | ||||||||| ||||||||| ||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
35307158 |
tcagtttcaccatagcaacggcaaagtctctagaaaaagtagcaccattggtactataactcctaaccaaattatcttgagacccattattgaaaagagc |
35307257 |
T |
|
| Q |
116 |
ttgatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgtcaaaacttgttggagtgagagtatcaagtggtgctaaattggtg |
215 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35307258 |
ttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttatcaaaacttgttggagtgagagtatcaagtggtgctaaattggtg |
35307357 |
T |
|
| Q |
216 |
tcattatcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctgaacgatcggcact |
315 |
Q |
| |
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|| | ||| ||||| || ||| || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| || |||||| |
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| T |
35307358 |
tc---accaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaaattggcact |
35307454 |
T |
|
| Q |
316 |
ctccttggcctatg |
329 |
Q |
| |
|
|||||||||||||| |
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| T |
35307455 |
ctccttggcctatg |
35307468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 35322159 - 35322469
Alignment:
| Q |
16 |
tcagtttcaccatagcagcagcaaagtctgtagaaaaagcagcctcattggtactgtaactcctaaccaaatcatcttgagacccattattgaaaagaac |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||| | ||||| ||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
35322159 |
tcagtttcaccatagcaacagcaaagtctcttctaaaagtagcaccattggtactataactcctaaccaaattatcttgagacccattattgaaaagagc |
35322258 |
T |
|
| Q |
116 |
ttgatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgtcaaaacttgttggagtgagagtatcaagtggtgctaaattggtg |
215 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||| ||||| ||||||||||||||| |
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| T |
35322259 |
ttgatcagaatggaaaagacctttgcttgcaacaagatttttatagtaattgttgtcaaaatttgttggagtgagagtgtcaagaggtgctaaattggtg |
35322358 |
T |
|
| Q |
216 |
tcattatcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctgaacgatcggcact |
315 |
Q |
| |
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|| | ||| ||||| || ||| || |||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| || |||||| |
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| T |
35322359 |
tc---accaccagaaagaggacaatttaatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaaattggcact |
35322455 |
T |
|
| Q |
316 |
ctccttggcctatg |
329 |
Q |
| |
|
|||||||||||||| |
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| T |
35322456 |
ctccttggcctatg |
35322469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 304
Target Start/End: Original strand, 35275250 - 35275533
Alignment:
| Q |
21 |
ttcaccatagcagcagcaaagtctgtagaaaaagcagcctcattggtactgtaactcctaaccaaatcatcttgagacccatta---ttgaaaagaactt |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||| |||| || ||||||||||| | |||||| ||| | ||||||||||||| |
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| T |
35275250 |
ttcaccatagcagcagcaaagtctctagaaaaagcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaactt |
35275349 |
T |
|
| Q |
118 |
gatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgtcaaaacttgttggagtgagagtatcaagtggtgctaaattggtgtc |
217 |
Q |
| |
|
|||||||||| | |||||||| | |||| ||||| |||||||||||||||||||| | |||||||||| || ||||| ||||||||||||||||| |
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| T |
35275350 |
gatcagaatgtagaagacctttattagcaataaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattggtgtc |
35275449 |
T |
|
| Q |
218 |
attatcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctgaa |
304 |
Q |
| |
|
| ||| ||| || || || |||||||||||| || |||||| |||||||||||| |||||||| ||||||| ||||||| |
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| T |
35275450 |
---accaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaa |
35275533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 104 - 304
Target Start/End: Original strand, 35289448 - 35289645
Alignment:
| Q |
104 |
attgaaaagaacttgatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgtcaaaacttgttggagtgagagtatcaagtggt |
203 |
Q |
| |
|
|||||||||| ||||||||||||| | || ||||| | |||||||||| ||||| ||||||||||||||| | ||||| || || |||||| ||| |
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| T |
35289448 |
attgaaaagagcttgatcagaatgaagaagtcctttattagcaacaaggtcattatagtaattgttgtcaaaagtaactggagagacagaatcaagaggt |
35289547 |
T |
|
| Q |
204 |
gctaaattggtgtcattatcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctga |
303 |
Q |
| |
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|| ||||| ||||| ||| |||| || ||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
35289548 |
gccaaatttatgtcac---caccagaagtaggacaatttgattttcttaaggttgcaaagtttgtgtcaatgttggtttcgttgtatatacgagttctga |
35289644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 227 - 329
Target Start/End: Original strand, 35280223 - 35280325
Alignment:
| Q |
227 |
agaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctgaacgatcggcactctccttggcct |
326 |
Q |
| |
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||||| || |||||| | ||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||| ||| || | || ||| |||||||| |
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| T |
35280223 |
agaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgttggtttcattgtatatgcgatttcggaaaaattgacattctgcttggcct |
35280322 |
T |
|
| Q |
327 |
atg |
329 |
Q |
| |
|
||| |
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|
| T |
35280323 |
atg |
35280325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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