View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12598_low_56 (Length: 331)

Name: NF12598_low_56
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12598_low_56
NF12598_low_56
[»] chr4 (17 HSPs)
chr4 (5-314)||(48872593-48872903)
chr4 (5-314)||(48877897-48878207)
chr4 (4-307)||(48865549-48865845)
chr4 (74-239)||(45346718-45346889)
chr4 (126-247)||(45364060-45364183)
chr4 (126-247)||(45375300-45375423)
chr4 (126-247)||(45382879-45383002)
chr4 (3-251)||(48842610-48842866)
chr4 (15-189)||(48856168-48856345)
chr4 (74-239)||(45342243-45342415)
chr4 (9-70)||(45354050-45354111)
chr4 (9-70)||(45356611-45356672)
chr4 (9-70)||(45363529-45363590)
chr4 (9-70)||(45370352-45370413)
chr4 (9-70)||(45382348-45382409)
chr4 (116-185)||(45342165-45342236)
chr4 (11-106)||(48900010-48900106)
[»] chr3 (3 HSPs)
chr3 (116-251)||(11014016-11014152)
chr3 (126-251)||(11023339-11023465)
chr3 (169-251)||(11004575-11004658)
[»] chr8 (1 HSPs)
chr8 (157-251)||(35648301-35648394)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 5 - 314
Target Start/End: Complemental strand, 48872903 - 48872593
Alignment:
Q  5 caagataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaatacaagcacaagagtatatttttctcatttacac 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  48872903 caagataacttcacagcatacagaatatgtataaaagaaacaccaatcaaacaagctatatatgaatacaagcacaagagtatatttttctcatttacac 48872804  T
Q  105 aaattataattaattgtctagttttttagctgtcaaagcaaactcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttga-ttattttag 203  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48872803 aaattataattaattgtctagttttttagctgtcaaagcaaaatcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttgagttattttag 48872704  T
Q  204 gtggaaaacacatgaaaagtttttatattatatctctaacaaaaccccaagtactgcagtctacagcctttgaagaatggacagtacgcaacaaaaatca 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48872703 gtggaaaacacatgaaaagtttttatattatatctctaacaaaacgccaagtactacagtctacagcctttgaagaatggacagtacgcaacaaaaatca 48872604  T
Q  304 aactatgtacc 314  Q
    |||||||||||    
T  48872603 aactatgtacc 48872593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 5 - 314
Target Start/End: Complemental strand, 48878207 - 48877897
Alignment:
Q  5 caagataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaatacaagcacaagagtatatttttctcatttacac 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  48878207 caagataacttcacagcatacagaatatgtataaaagaaacaccaatcaaacaagctatatatgaatacaagcacaagagtatatttttctcatttacac 48878108  T
Q  105 aaattataattaattgtctagttttttagctgtcaaagcaaactcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttga-ttattttag 203  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  48878107 aaattataattaattgtctagttttttagctgtcaaagcaaaatcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttgagttattttag 48878008  T
Q  204 gtggaaaacacatgaaaagtttttatattatatctctaacaaaaccccaagtactgcagtctacagcctttgaagaatggacagtacgcaacaaaaatca 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  48878007 gtggaaaacacatgaaaagtttttatattatatctctaacaaaacgccaagtactacagtctacagcctttgaagaatggacagtacgcaacaaaaatca 48877908  T
Q  304 aactatgtacc 314  Q
    |||||||||||    
T  48877907 aactatgtacc 48877897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 4 - 307
Target Start/End: Complemental strand, 48865845 - 48865549
Alignment:
Q  4 tcaagataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaatacaagcacaagagtatatttttctcatttaca 103  Q
    |||| ||||||||||| || ||| | |||||||||||||||||| ||||||||||| ||||||||||| |||| ||| ||||||| ||||||||||||||    
T  48865845 tcaaaataacttcacaacacacaaagtatgtataaaagaaacacaaatcaaacaac-tatatatgaatccaagtacaggagtataattttctcatttaca 48865747  T
Q  104 caaattataa-ttaattgtctagttttttagctgtcaaagcaaactcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttga-ttatttt 201  Q
    |||||||||| | || ||||||||||  |||||||| || ||||||||||| | |||||||| ||||||||| ||| |||||||||| ||||  ||||||    
T  48865746 caaattataactaaactgtctagtttagtagctgtccaaacaaactcagcttagatgaactttgtcgtgaatgatccattcaaaaagcttgagctatttt 48865647  T
Q  202 aggtggaaaacacatgaaaagtttttatattatatctc-taacaaaaccccaagtactgcagtctacagcctttgaagaatggacagtacgcaacaaaaa 300  Q
    | |  |||||||||  || ||||||||||||||| ||| |||||||||||||||||       | |||||| |||||||||||| || ||||||||| ||    
T  48865646 aaggtgaaaacaca--aacagtttttatattatacctcttaacaaaaccccaagta-------ccacagcccttgaagaatggagagcacgcaacaataa 48865556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 45346718 - 45346889
Alignment:
Q  74 aagcacaagagtatatttttctcatttacacaaattat----aattaa-ttgtctagttttttagctgtcaaagcaaactcagctcaaatgaacttggtc 168  Q
    ||||||| ||||||| |||||||||||||| || || |    |||||| ||||||| ||||||||||||| |||| ||||||||||| |||| ||| |||    
T  45346718 aagcacatgagtataattttctcatttacataatttttttttaattaaattgtctatttttttagctgtccaagcgaactcagctcagatgagctttgtc 45346817  T
Q  169 gtgaatcatcgattcaaaaaggttga-ttattttaggtggaaaacacatgaaaagtttttatattatatctc 239  Q
    |||||||||| |||||||||| ||||  |||| |||||||||||||| | ||  ||||||||||||||||||    
T  45346818 gtgaatcatcaattcaaaaagcttgagctattgtaggtggaaaacacgtaaatggtttttatattatatctc 45346889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 126 - 247
Target Start/End: Original strand, 45364060 - 45364183
Alignment:
Q  126 ttttttagctgtcaaagcaaactcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttga--ttattttaggtggaaaacacatgaaaagt 223  Q
    ||||||||||||||||||||||||| | || |||||||| ||| ||||||||| |||||||||| ||||  |  || ||||| ||||||| ||||| |||    
T  45364060 ttttttagctgtcaaagcaaactcaacacagatgaactttgtcttgaatcatcaattcaaaaagcttgagctacttataggttgaaaacatatgaacagt 45364159  T
Q  224 ttttatattatatctctaacaaaa 247  Q
    ||||||||||||||||||||||||    
T  45364160 ttttatattatatctctaacaaaa 45364183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 126 - 247
Target Start/End: Original strand, 45375300 - 45375423
Alignment:
Q  126 ttttttagctgtcaaagcaaactcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttga--ttattttaggtggaaaacacatgaaaagt 223  Q
    ||||||||||||||||||||||||| | || |||||||| ||| ||||||||| |||||||||| ||||  |  || ||||| ||||||| ||||| |||    
T  45375300 ttttttagctgtcaaagcaaactcaacacagatgaactttgtcttgaatcatcaattcaaaaagcttgagctacttataggttgaaaacatatgaacagt 45375399  T
Q  224 ttttatattatatctctaacaaaa 247  Q
    ||||||||||||||||||||||||    
T  45375400 ttttatattatatctctaacaaaa 45375423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 126 - 247
Target Start/End: Original strand, 45382879 - 45383002
Alignment:
Q  126 ttttttagctgtcaaagcaaactcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttga--ttattttaggtggaaaacacatgaaaagt 223  Q
    ||||||||||||||||||||||||| | || |||||||| ||| ||||||||| |||||||||| ||||  |  || ||||| ||||||| ||||| |||    
T  45382879 ttttttagctgtcaaagcaaactcaacacagatgaactttgtcttgaatcatcaattcaaaaagcttgagctacttataggttgaaaacatatgaacagt 45382978  T
Q  224 ttttatattatatctctaacaaaa 247  Q
    ||||||||||||||||||||||||    
T  45382979 ttttatattatatctctaacaaaa 45383002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 3 - 251
Target Start/End: Original strand, 48842610 - 48842866
Alignment:
Q  3 atcaagataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatat--gaatacaagcacaagagtatatttttctcattt 100  Q
    ||||||||||||||||| || |||||||| | || ||||||| || ||||||||||  |||||||  |||  |||| | | || |||| |||||||| ||    
T  48842610 atcaagataacttcacaacacacagaatacggatgaaagaaagacaaatcaaacaagttatatatatgaagccaagaaaaggaatatacttttctcactt 48842709  T
Q  101 --acacaaattataatta-attgtctagtttttt-agctgtcaaagcaaa-ctcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttgat 195  Q
      ||| |||||||||||| ||| |||| |||||| ||| ||| | ||||| ||||| ||| |||||||| || |||||||||| || |||||| ||| |     
T  48842710 gtacaaaaattataattagattatctactttttttagccgtccatgcaaatctcagatcagatgaactttgttgtgaatcatcaatccaaaaaagttaag 48842809  T
Q  196 -tattttaggtggaaaacacatgaaaagtttttatattatatctctaacaaaacccc 251  Q
     ||||||||  |||||||||||||| ||||||||||||||||||||||| |||||||    
T  48842810 ctattttagacggaaaacacatgaacagtttttatattatatctctaactaaacccc 48842866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 48856345 - 48856168
Alignment:
Q  15 tcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaatacaagcacaagagtatatttttctcatt--tacacaaattata 112  Q
    ||||| || ||||||||| |||||||||||||| |||||||||| |||||||  ||  |||||| | || |||| ||||||||||  |||| ||||||||    
T  48856345 tcacaacacacagaatatatataaaagaaacacaaatcaaacaagctatatacaaagccaagcataggaatataattttctcatttatacaaaaattata 48856246  T
Q  113 att-aattgtctagttttttagctgtcaaagcaaactcagctcaaatgaacttggtcgtgaatcatcgattcaaaaag 189  Q
    ||| |||| || | | | |||| |||| || |||||| |||||||||||| || ||||||||||||| ||||||||||    
T  48856245 attaaattttcgattctattagttgtccaaccaaacttagctcaaatgaattttgtcgtgaatcatcaattcaaaaag 48856168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 45342243 - 45342415
Alignment:
Q  74 aagcacaagagtatatttttctcatttacacaaattat---aattaa-ttgtctag--ttttttagctgtcaaagcaaactcagctcaaatgaacttggt 167  Q
    ||||||| ||||||| |||||||||||||| || || |   |||||| |||||||   ||||||||||||| |||| ||||||||||| |||| ||| ||    
T  45342243 aagcacatgagtataattttctcatttacataattttttttaattaaattgtctatatttttttagctgtccaagcgaactcagctcagatgagctttgt 45342342  T
Q  168 cgtgaatcatcgattcaaaaaggttga-ttattttaggtggaaaacacatgaaaagtttttatattatatctc 239  Q
    ||||||||||| |||||||||| ||||  |||| |||||||||||||| | ||  |||| |||| ||||||||    
T  45342343 cgtgaatcatcaattcaaaaagcttgagctattgtaggtggaaaacacgtaaatggtttctatagtatatctc 45342415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 45354050 - 45354111
Alignment:
Q  9 ataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaa 70  Q
    |||||||||||  | ||||||||||||||||| |||||| ||||||||||  ||||||||||    
T  45354050 ataacttcacaatacacagaatatgtataaaaaaaacacaaatcaaacaaaatatatatgaa 45354111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 45356611 - 45356672
Alignment:
Q  9 ataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaa 70  Q
    |||||||||||  | ||||||||||||||||| |||||| ||||||||||  ||||||||||    
T  45356611 ataacttcacaatacacagaatatgtataaaaaaaacacaaatcaaacaaaatatatatgaa 45356672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 45363529 - 45363590
Alignment:
Q  9 ataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaa 70  Q
    |||||||||||  | ||||||||||||||||| |||||| ||||||||||  ||||||||||    
T  45363529 ataacttcacaatacacagaatatgtataaaaaaaacacaaatcaaacaaaatatatatgaa 45363590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 45370352 - 45370413
Alignment:
Q  9 ataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaa 70  Q
    |||||||||||  | ||||||||||||||||| |||||| ||||||||||  ||||||||||    
T  45370352 ataacttcacaatacacagaatatgtataaaaaaaacacaaatcaaacaaaatatatatgaa 45370413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 45382348 - 45382409
Alignment:
Q  9 ataacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaa 70  Q
    |||||||||||  | ||||||||||||||||| |||||| ||||||||||  ||||||||||    
T  45382348 ataacttcacaatacacagaatatgtataaaaaaaacacaaatcaaacaaaatatatatgaa 45382409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 45342165 - 45342236
Alignment:
Q  116 aattgtctagttttttagctgtcaaagcaaac--tcagctcaaatgaacttggtcgtgaatcatcgattcaa 185  Q
    ||||| ||| |||||| |||||||||||||||  ||| |||| |||||||| ||| ||||||||| ||||||    
T  45342165 aattgcctaattttttggctgtcaaagcaaactttcaactcagatgaactttgtcttgaatcatcaattcaa 45342236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 48900106 - 48900010
Alignment:
Q  11 aacttcacagcatacagaatatgtataaaagaaacacgaatcaaacaacctatatatgaatacaagcacaagagtat-atttttctcatttacacaa 106  Q
    ||||||||| || ||  ||||||||||||||||||||  ||||||||| ||||| |||||  | |||| | |||||| |||||| ||||||| ||||    
T  48900106 aacttcacaacacacgaaatatgtataaaagaaacacagatcaaacaagctatacatgaagccgagcataggagtataatttttatcatttatacaa 48900010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 11014016 - 11014152
Alignment:
Q  116 aattgtctagttttttagctgtcaaagcaaactcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttgat-tattttaggtggaaaacac 214  Q
    |||||| || |||||||| |||| |||||||||||||||| |||||||| ||   |||||||| |||||||||| || |  |||||||||||||||| ||    
T  11014016 aattgtgtatttttttagatgtccaagcaaactcagctcagatgaactttgttaggaatcatcaattcaaaaagcttaagctattttaggtggaaaatac 11014115  T
Q  215 atgaaaagtttttatattatatctctaacaaaacccc 251  Q
    ||||| ||||||||||| |||||| ||||| ||||||    
T  11014116 atgaatagtttttatatcatatctttaacataacccc 11014152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 251
Target Start/End: Original strand, 11023339 - 11023465
Alignment:
Q  126 ttttttagctgtcaaagcaaactcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttga-ttattttaggtggaaaacacatgaaaagtt 224  Q
    |||||||| ||| ||||||||||||||||| |||||||| || |||||||||| |||| ||||| || |  |||||||||||||||  ||||||| ||||    
T  11023339 ttttttagatgttaaagcaaactcagctcagatgaactttgttgtgaatcatcaattccaaaagctttagctattttaggtggaaagtacatgaatagtt 11023438  T
Q  225 tttatattatatctctaacaaaacccc 251  Q
    ||||||| |||||| ||||| ||||||    
T  11023439 tttatatcatatctttaacataacccc 11023465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 11004575 - 11004658
Alignment:
Q  169 gtgaatcatcgattcaaaaaggttgat-tattttaggtggaaaacacatgaaaagtttttatattatatctctaacaaaacccc 251  Q
    |||||||||| |||||||||| || |  | |||||||||||||| ||||||| ||||||||||| |||||| ||||| ||||||    
T  11004575 gtgaatcatcaattcaaaaagctttagcttttttaggtggaaaatacatgaatagtttttatatcatatctttaacataacccc 11004658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 251
Target Start/End: Original strand, 35648301 - 35648394
Alignment:
Q  157 atgaacttggtcgtgaatcatcgattcaaaaaggttgattattttaggtggaaaacacatgaaaagtttttatattatatctctaacaaaacccc 251  Q
    |||||||| |||||| |||||| |||||||| | | |  | |||||| |||||||| ||||||  |||||||||||||||||||||| |||||||    
T  35648301 atgaactttgtcgtgtatcatcaattcaaaa-gttaggatgttttagatggaaaactcatgaacggtttttatattatatctctaactaaacccc 35648394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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