View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_58 (Length: 315)
Name: NF12598_low_58
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 297
Target Start/End: Original strand, 41554672 - 41554957
Alignment:
| Q |
16 |
agttggagaattaattctcgtcgttgtgttccttgatcggtcatagtaactcataattaatcaaatctttggatataatcatat----aagtaccatagc |
111 |
Q |
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| T |
41554672 |
agttggagaattaattctcgtcgttgtgttccttgatcggtcatagtaactcataattaatcaaatctttggatataatcatatatataagtaccatagc |
41554771 |
T |
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| Q |
112 |
gatatttgcgctttcaaagaacaagatgtttacgttagaagtgaacacgtagattgatcaataagttggctacgacgtgttgtcgctgtagctgcataaa |
211 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41554772 |
gatatttgcgctttgaaagaacaagatgtttacgttagaagagaacacgtagattgatcagtaagttggctacgacgtgttgtcgctgtagctgcataaa |
41554871 |
T |
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| Q |
212 |
attaagaggtactcgaaaacatccaaataccagctaatatgcacaaaagtattattgaatcaaatgacataattgcaagttaagaa |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41554872 |
attaagaggtactcgaaaacatccaaataccagctaatatgcacaaaagtattattgaatcaaatgacataattgcaagttaagaa |
41554957 |
T |
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