View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_59 (Length: 315)
Name: NF12598_low_59
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_59 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0045 (1 HSPs) |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 17831314 - 17831610
Alignment:
| Q |
19 |
tcatctccgccgcaatcgtgattccgacccacagaaaccatcacaattcaacttctccagagaaagagaaagatgacatcgtaatatgaaccgaaatctt |
118 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17831314 |
tcatctccgccgcaaccgtgattccgacccacagaaaccatcacaattcaacttctccagagaaagagaaagatgtcatcgtaatatgaaccgaaatctt |
17831413 |
T |
|
| Q |
119 |
tcatcgtttctctctcccttcatcaacaatgcttcttctgttgctaaatcttaaacatccatcatgcttaatgttttattccatcgttgttcagatttgt |
218 |
Q |
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|| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17831414 |
tcgtcgtttctctctcccttcatcgacgatgcttcttctgttgctaaatcttaaacatccatcatgcttaatgttttattccatcgttgttcagatttgt |
17831513 |
T |
|
| Q |
219 |
tgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgtttctctgaagtttagttctcagtttcactttcatccc |
315 |
Q |
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| T |
17831514 |
tgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgtttctctgaagtttagttctcagtttcactttcatccc |
17831610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 7135369 - 7135603
Alignment:
| Q |
19 |
tcatctccgccgcaatcgtgattccgacccacagaaaccatcacaattcaacttctccagagaaagagaaagatgacatcgtaatatgaaccgaaatctt |
118 |
Q |
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|||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7135369 |
tcatctccgccgtaaccgtgattctgacccacagaaaccatcacaattcaacttctccagagaaagagaaagatgtcatcgtaatatgaaccgaaatctt |
7135468 |
T |
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| Q |
119 |
tcatcgtttctctctcccttcatcaacaatgcttcttctgttgctaaatcttaaacatccatcatgcttaatgttttattccatcgttgttcagatttgt |
218 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | |||||||||||||||||||||||| |
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| T |
7135469 |
ccgtcgtttctctctcccttcatcaacaatgcttcttctgttgctaaatctcaaacatccatcatacttaatgctctattccatcgttgttcagatttgt |
7135568 |
T |
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| Q |
219 |
tgattttgtgaattttctctcaaggtaatagtttt |
253 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
7135569 |
tgattttgtgaattttctctcaaggtaatagtttt |
7135603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 222 - 315
Target Start/End: Complemental strand, 52525515 - 52525420
Alignment:
| Q |
222 |
ttttgtgaattttctctcaaggtaatagttttaccctttctat--gaattgaattttgtttctctgaagtttagttctcagtttcactttcatccc |
315 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||| || |||||||||||||||||||||||| |
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| T |
52525515 |
ttttgtgaattttctctcaaggtaatcgttttaccctttctatagaaattgaatttcgtttctctgaatttcagttctcagtttcactttcatccc |
52525420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 120 - 280
Target Start/End: Complemental strand, 22292316 - 22292156
Alignment:
| Q |
120 |
catcgtttctctctcccttcatcaacaatgcttcttctgttgctaaatcttaaacatccatcatgcttaatgttttattccatcgttgttcagatttgtt |
219 |
Q |
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||||||| |||||||| ||||||||||| |||||| | |||||| ||||| | |||||||| |||||||||| | ||||| | |||||||||||| | |
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| T |
22292316 |
catcgttgctctctccgttcatcaacaaagcttctcccgttgctgaatctaagacatccattatgcttaatgctcccttccaccactgttcagatttgct |
22292217 |
T |
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| Q |
220 |
gattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt |
280 |
Q |
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|||||| ||| |||||||||||||||| | ||| ||||||||||| |||||||| ||||| |
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| T |
22292216 |
aattttgcgaagtttctctcaaggtaatcgcttttccctttctatgtattgaattgtgttt |
22292156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 7135602 - 7135644
Alignment:
| Q |
273 |
ttttgtttctctgaagtttagttctcagtttcactttcatccc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7135602 |
ttttgtttctctgaagtttagttctcagtttcactttcatccc |
7135644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 280
Target Start/End: Original strand, 5658334 - 5658415
Alignment:
| Q |
199 |
ccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt |
280 |
Q |
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||||||||||||||||||| | |||||| || |||||||||||||||||| ||| |||||||||||||||||||| ||||| |
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| T |
5658334 |
ccatcgttgttcagatttgctaattttgcaaagtttctctcaaggtaatagcttttccctttctatgaattgaattgtgttt |
5658415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 14677558 - 14677485
Alignment:
| Q |
206 |
tgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgtt |
279 |
Q |
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|||||||||||| | |||||| || |||||||||||||||||| ||| |||||||||||||||||||| |||| |
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| T |
14677558 |
tgttcagatttgctaattttgcaaagtttctctcaaggtaatagcttttccctttctatgaattgaattgtgtt |
14677485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 31100415 - 31100334
Alignment:
| Q |
199 |
ccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt |
280 |
Q |
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|||||| |||||||||||| | |||||| || |||||||||||||||||| ||| | ||||||||||||||||| ||||| |
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| T |
31100415 |
ccatcgctgttcagatttgctaattttgcaaagtttctctcaaggtaatagctttttcttttctatgaattgaattgtgttt |
31100334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 280
Target Start/End: Complemental strand, 11176 - 11096
Alignment:
| Q |
200 |
catcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt |
280 |
Q |
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|
|||||||||||| ||||| | |||||| || |||||||||||||||||| ||| |||||||||||||||||||| ||||| |
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| T |
11176 |
catcgttgttcaaatttgctaattttgcaaagtttctctcaaggtaatagcttttccctttctatgaattgaattgtgttt |
11096 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 10093043 - 10093117
Alignment:
| Q |
206 |
tgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt |
280 |
Q |
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|||||||||||| | |||||| || |||||||||||||||||| ||| |||||||||||||||||||| ||||| |
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| T |
10093043 |
tgttcagatttgctaattttgcaaagtttctctcaaggtaatagcttttccctttctatgaattgaattgtgttt |
10093117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 33044989 - 33044908
Alignment:
| Q |
199 |
ccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt |
280 |
Q |
| |
|
|||||| |||||||||||| | |||||| || |||||||||||||||||| ||| || ||||||||||||||||| ||||| |
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| T |
33044989 |
ccatcgctgttcagatttgctaattttgcaaagtttctctcaaggtaatagcttttccttttctatgaattgaattgtgttt |
33044908 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 279
Target Start/End: Original strand, 35639 - 35719
Alignment:
| Q |
199 |
ccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgtt |
279 |
Q |
| |
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|||||| |||||||||||| | |||||| || ||| |||||||||||||| ||| |||||||||||||||||||| |||| |
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| T |
35639 |
ccatcgctgttcagatttgctaattttgcaaagtttatctcaaggtaatagcttttccctttctatgaattgaattgtgtt |
35719 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 37362273 - 37362214
Alignment:
| Q |
195 |
tattccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagtttta |
254 |
Q |
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||||||||| ||||||| ||||||| ||||| |||||||||||||||||| || |||||| |
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| T |
37362273 |
tattccatcattgttcatatttgtttattttatgaattttctctcaaggttatcgtttta |
37362214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 17682380 - 17682425
Alignment:
| Q |
235 |
ctctcaaggtaatagttttaccctttctatgaattgaattttgttt |
280 |
Q |
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||||||||||||| ||||| |||||||||||||||||||| ||||| |
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| T |
17682380 |
ctctcaaggtaatcgtttttccctttctatgaattgaattgtgttt |
17682425 |
T |
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