View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_62 (Length: 310)
Name: NF12598_low_62
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_62 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 27003473 - 27003782
Alignment:
| Q |
1 |
tcagtgcacgttgattattttagtgcattgaaaataggcaaacccatatatgataccattaattaattatgatgtgtggaaaaatattctgaagtattat |
100 |
Q |
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| T |
27003473 |
tcagtgcacgttgattattttagtgcattgaaaataggcaaacccatatacgataccattaattaattatgatgtgtggaaaaatattctgaagtattat |
27003572 |
T |
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| Q |
101 |
taaatttatgtgaaaagtacaaacactaatctgaatatatagaaactttaattcaacggcctaattaataagcttaatacaaaatataatatttacatag |
200 |
Q |
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| T |
27003573 |
taaatttatgtgaaaagtacaaacactaatctgaatatatagaaactttaattcaacggcctaattaataagcttaatacaaaatataatatttacatag |
27003672 |
T |
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| Q |
201 |
ttatgtgcctacaaccctaattcattatcgacaacataatgcatatgagtttgttcggcatacttgggatgccaatgtagcctatgcagccccagcaatc |
300 |
Q |
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| T |
27003673 |
ttatgtgcctacaaccctaattcattatcgacaacataatgcatatgagtttgttcggcatacttgggatgccaatgtagcccatgcagccccagcaatc |
27003772 |
T |
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| Q |
301 |
ccatagccta |
310 |
Q |
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|||||||||| |
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| T |
27003773 |
ccatagccta |
27003782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 2 - 184
Target Start/End: Original strand, 26988693 - 26988876
Alignment:
| Q |
2 |
cagtgcacgttgattattttagtgcattgaaaataggcaaacccatatatgataccattaattaattatgatgtgtggaaaaatattctgaagtattatt |
101 |
Q |
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| T |
26988693 |
cagtgcacgttgattattttagtacattgaaaataggcaaaaccatatatgataccattgattaattatgatgtgtg-aaaaatcttttgaagtattatt |
26988791 |
T |
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| Q |
102 |
aaatttatgtgaaaag-----tacaaacactaatctgaatatatagaaactttaattcaacggcctaattaataagcttaatacaaaa |
184 |
Q |
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| T |
26988792 |
aaattcatgtgaacagaacagtacaaacactaatctga--atatagaagctttaactc-atggcctaattagtaagcttaatacaaaa |
26988876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 188 - 306
Target Start/End: Original strand, 26989065 - 26989182
Alignment:
| Q |
188 |
aatatttacatagttatgtgcctacaaccctaattcattatcgacaacataatgcatatgagtttgttcggcatacttgggatgccaatgtagcctatgc |
287 |
Q |
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| T |
26989065 |
aatatttacatagt-atgtgcctacaaccctaattacttgtttacaacgtaatgcatataagtttgttcggcatacttgggatgccaatgtagcccatgc |
26989163 |
T |
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| Q |
288 |
agccccagcaatcccatag |
306 |
Q |
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| T |
26989164 |
agccccagcaatcccatag |
26989182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 26978540 - 26978462
Alignment:
| Q |
232 |
caacataatgcatatgagtttgttcggcatacttgggatgccaatgtagcctatgcagccccagcaatcccatagccta |
310 |
Q |
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| T |
26978540 |
caacatgatgtatgtgagtttgtttagcatacttgtgatgccaatgtagcccaagcagccccagcaatcccatagccta |
26978462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 26978732 - 26978653
Alignment:
| Q |
14 |
attattttagtgcattgaaaataggcaaacccatatatgataccattaattaattatgatgtgtggaaaaatattctgaa |
93 |
Q |
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| T |
26978732 |
attatttcagtaaattgaaaataggacaaacgatatatgatagcattaactaattatgatgtgtggaaaaatattatgaa |
26978653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 143
Target Start/End: Complemental strand, 41641781 - 41641711
Alignment:
| Q |
75 |
tgtggaaaaatattctgaagtattattaa--atttatgtgaaaagtacaaacactaatctgaatatataga |
143 |
Q |
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| T |
41641781 |
tgtggaaaaatattctgtagtactataaatcaattgtgtgaagagtagaaacactaatctgaatatataga |
41641711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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