View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_63 (Length: 303)
Name: NF12598_low_63
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 42768196 - 42768466
Alignment:
| Q |
17 |
gatgaagagatttgattataccaacaatgccagaaacatgaggggttgacattgaagttcccgacaaagtaatgaaaggagatctgcgtttatcggactt |
116 |
Q |
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| T |
42768196 |
gatgaagagatttgattataccaacaatgccagaaacatgaggggttgacattgaagttcccgacaaagtaatgaaaggagatctgcgtttatcagattt |
42768295 |
T |
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| Q |
117 |
ttgttgagagggagaagcagcttcactataagcagcgactatgtcgactcccggtcctgtgatgtcaggctgaaacataaaaccaaaattacttgacaca |
216 |
Q |
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| T |
42768296 |
ttgttgagagggagaagcagcttcactataagcagcgactatgtcgactcccggtcctgtgatgtcgggctgaaacataaaaccaaaattacttgacaca |
42768395 |
T |
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| Q |
217 |
atcactacgaagtcatttagatatctttgataaactaattcaaagaaataataaaccttgaggattgatgg |
287 |
Q |
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| T |
42768396 |
atcactacgaagtcatttagatatctttgataaactaattcaaagaaataataaaccttgaggattgatgg |
42768466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 42715634 - 42715804
Alignment:
| Q |
17 |
gatgaagagatttgattataccaacaatgccagaaacatgaggggttgacattgaagttcccgacaaagtaatgaaaggagatctgcgtttatcggactt |
116 |
Q |
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| T |
42715634 |
gatgaagagattttactagcccaacaagaccagcaacatgaggacatgacattgaagttcctgacataatattgaaaagagttctgcgtttatcatattc |
42715733 |
T |
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| Q |
117 |
ttgttgagagggagaagcagcttcactataagcagcgactatgtcgactcccggtcctgtgatgtcaggct |
187 |
Q |
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| T |
42715734 |
ttgttccgagggagatatattttcactataagcagcaattatgtcgactcctggtgcggtgatgtcaggct |
42715804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 42761387 - 42761443
Alignment:
| Q |
135 |
agcttcactataagcagcgactatgtcgactcccggtcctgtgatgtcaggctgaaa |
191 |
Q |
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| T |
42761387 |
agcttcactataagctgcaattatgttgactcctggtgcagtgatgtcaggctgaaa |
42761443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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