View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_66 (Length: 296)
Name: NF12598_low_66
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_66 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 11225287 - 11225565
Alignment:
| Q |
1 |
atgcatgtactataagtgctgcacattgttgataaaattctggaaactgattgtaaaatcaaaattctgtgaactgattgtttaatgtgtacctgaatgt |
100 |
Q |
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| T |
11225287 |
atgcatgtactataagtgttgcacattgttgataaaattctggaaactgattgtaaaatcaaaattttgtgaactgattgtttaatgtgtacctgaatgt |
11225386 |
T |
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| Q |
101 |
aagctgattatttaattgaaaaggattatgcaaactgattgaaaaatatagctgtaattatacttttgggtgtgttggttgattaaatgttgtgcatgta |
200 |
Q |
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| T |
11225387 |
aagctgattatttaattcaaaaggattctgcaagttgattgaaaaatatagctgtaagtatacttttgggtgtgttggttgattaaatgttgtgcatgta |
11225486 |
T |
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| Q |
201 |
gtacaagtgttacacattgttgacaaaattctgagaattgattgtaaaatcaaaattatgcgaactgattgcttgatgt |
279 |
Q |
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| T |
11225487 |
gtacaagtgttacgcattcttgacaaaattctgagaactgattgtaaaatcaaaattatgcgaactgattgtttgatgt |
11225565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 62 - 271
Target Start/End: Original strand, 11225158 - 11225366
Alignment:
| Q |
62 |
aaattctgtgaactgattgtttaatgtgtacctgaatgtaagctgattatttaattgaaaaggattatgcaaactgattgaaaaatatagctgtaattat |
161 |
Q |
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| T |
11225158 |
aaattctgcgaactaat-gtttgatgtgtacctgaatgtaagttggttgtttaattgaaaaggattctgcaaactgatggaaaaagatagctgtaaatat |
11225256 |
T |
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| Q |
162 |
acttttgggtgtgttggttgattaaatgttgtgcatgtagtacaagtgttacacattgttgacaaaattctgagaattgattgtaaaatcaaaattatgc |
261 |
Q |
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| T |
11225257 |
acttttgggtgtgttgattgattaaatgttatgcatgtactataagtgttgcacattgttgataaaattctggaaactgattgtaaaatcaaaattttgt |
11225356 |
T |
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| Q |
262 |
gaactgattg |
271 |
Q |
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| T |
11225357 |
gaactgattg |
11225366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 11224937 - 11225156
Alignment:
| Q |
2 |
tgcatgtactataagtgctgcacattgttgataaaattctggaaactgattgtaaaatcaaaattctgtgaactgattgtttaatgtgtacctgaatgta |
101 |
Q |
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|||||||| |||||| | | ||||||||||| || |||||| |||||||| ||||||||||||||| || |||||||||||||| ||||||| |||| |
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| T |
11224937 |
tgcatgtagtataagagttacacattgttga-aatattctgcgaactgattacaaaatcaaaattctga-aattgattgtttaatgtttacctgattgta |
11225034 |
T |
|
| Q |
102 |
agctgattatttaattgaaaaggattatgcaaactgattgaaaaatatagctgtaattatacttttgggtgtgttggttgattaaatgttgtgcatgtag |
201 |
Q |
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| T |
11225035 |
agctgattgtttaattgaaaaagattctgcaaattaattgaaaaagatggatgtaagtatactttaaggcgtgttggttgattatatgttgttcatgtag |
11225134 |
T |
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| Q |
202 |
tacaagtgttacacattgttga |
223 |
Q |
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|| ||| ||||||||||||||| |
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| T |
11225135 |
tataagagttacacattgttga |
11225156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 257
Target Start/End: Original strand, 11224891 - 11225000
Alignment:
| Q |
148 |
atagctgtaattatacttttgggtgtgttg-gttgattaaatgttgtgcatgtagtacaagtgttacacattgttgacaaaattctgagaattgattgta |
246 |
Q |
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|||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||| || |||||| ||| ||||| | |
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| T |
11224891 |
atagttgtaagtatacttttgggtgtgttaagttgattaaatgttgtgcatgtagtataagagttacacattgttga-aatattctgcgaactgattaca |
11224989 |
T |
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| Q |
247 |
aaatcaaaatt |
257 |
Q |
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| T |
11224990 |
aaatcaaaatt |
11225000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 11225479 - 11225592
Alignment:
| Q |
2 |
tgcatgtactataagtgctgcacattgttgataaaattctggaaactgattgtaaaatcaaaattctgtgaactgattgtttaatgtgtacctgaatgta |
101 |
Q |
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|||||||| || ||||| | | |||| |||| ||||||||| |||||||||||||||||||||| || ||||||||||||| |||| | |||| |||| |
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| T |
11225479 |
tgcatgtagtacaagtgttacgcattcttgacaaaattctgagaactgattgtaaaatcaaaattatgcgaactgattgtttgatgtatttctgattgta |
11225578 |
T |
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| Q |
102 |
agctgattatttaa |
115 |
Q |
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| T |
11225579 |
agttgattgtttaa |
11225592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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