View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_67 (Length: 292)
Name: NF12598_low_67
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_67 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 276
Target Start/End: Original strand, 20273783 - 20274047
Alignment:
| Q |
12 |
gtgagatgaactttttaaataatgtggcatcannnnnnngtctagttatcctctaggcacaactgcaaagattaatcctttcgagaatctggagagcatt |
111 |
Q |
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| T |
20273783 |
gtgacatgaactttttaaataatgtggcatcatttttttgtttagttatcctctaggcacaactgcaaagattaatccattcgagaatctggagagcatt |
20273882 |
T |
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| Q |
112 |
taagggttgcctctcccaaatggtgaattttcatatgcattgggtcatagactttttaaaaagtacacatgctacatttctatccgtccaaccagtgaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20273883 |
taagggttgcctctcccaaatggtgaattttcatatgcattgggtcatagactttttaaaaagtacacatgctacatttccatccgtccaaccagtgaaa |
20273982 |
T |
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| Q |
212 |
aacaagtgacaggcaagtcctagaagcacataataagtgggcgaccaaacttgggagaatgtaat |
276 |
Q |
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| T |
20273983 |
aacaagtgacaggcaagtcctagaaacacataataagtgggcgaccaaacgtgggagaatgtaat |
20274047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 276
Target Start/End: Original strand, 21060411 - 21060675
Alignment:
| Q |
12 |
gtgagatgaactttttaaataatgtggcatcannnnnnngtctagttatcctctaggcacaactgcaaagattaatcctttcgagaatctggagagcatt |
111 |
Q |
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|||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21060411 |
gtgacatgaactttttaaataatgtggcatcatttttttgtttagttatcctctaggcacaactgcaaagattaatccattcgagaatctggagagcatt |
21060510 |
T |
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| Q |
112 |
taagggttgcctctcccaaatggtgaattttcatatgcattgggtcatagactttttaaaaagtacacatgctacatttctatccgtccaaccagtgaaa |
211 |
Q |
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| T |
21060511 |
taagggttgcctctcccaaatggtgaattttcatatgcattgggtcatagactttttaaaaagtacacatgctacatttccatccgtccaaccagtgaaa |
21060610 |
T |
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| Q |
212 |
aacaagtgacaggcaagtcctagaagcacataataagtgggcgaccaaacttgggagaatgtaat |
276 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
21060611 |
aacaagtgacaggcaagtcctagaaacacataataagtgggcgaccaaacgtgggagaatgtaat |
21060675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 42522066 - 42522116
Alignment:
| Q |
91 |
ttcgagaatctggagagcatttaagggttgcctctcccaaatggtgaattt |
141 |
Q |
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|||||| |||||||| ||||| ||| ||||||||||||||| ||||||||| |
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| T |
42522066 |
ttcgaggatctggagcgcattcaagagttgcctctcccaaaaggtgaattt |
42522116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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