View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12598_low_68 (Length: 289)
Name: NF12598_low_68
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_68 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 9208391 - 9208114
Alignment:
| Q |
1 |
tcataaaattttaattcgtgtttcacataatattgtttctaaaatttactttggtagcacaatatcaaatttttgataagtaaatttttattaggtaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9208391 |
tcataaaattttaattcgtgtttcacataatattgtttataaaatttactttggtagcacaatatcaaattttagataagtaaatttttattaggtaaga |
9208292 |
T |
|
| Q |
101 |
ataaaatatcttgtattgtcccggcgaacttagcacggttgctagggacgttgcataatatatgtagaggtcgaggttcgaatcctgaccataccacttg |
200 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||| |
|
|
| T |
9208291 |
ataaaatatcttgtattgtccccgtgaacttagcacggttgctagggacgttgcataatatatgtaga-gtcggggttcgaaccctgaccataccacttg |
9208193 |
T |
|
| Q |
201 |
ttcaccttaaaattggatttctagccattaggctatttgatccacacaaaaacaaaacttgtattcttccactcctttg |
279 |
Q |
| |
|
|||| |||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9208192 |
ttcatattaaaactgaatttctagccattaagctatttgatccacacaaaaacaaaacttgtattcttccactactttg |
9208114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 257
Target Start/End: Original strand, 23405204 - 23405334
Alignment:
| Q |
129 |
cttagcacggttgctagggacgttgcataatatatgtagaggtcgaggttcgaatcctgaccataccacttgttcaccttaaaa--ttggatttctagcc |
226 |
Q |
| |
|
|||||| | |||| ||||||| |||||||||||||| || ||||| |||||||| |||| || |||||| |||||||||||| || |||||||||| |
|
|
| T |
23405204 |
cttagctcagttggtagggacattgcataatatatgcaggggtcggggttcgaaccctggacaccccacttattcaccttaaaaaggtgaatttctagcc |
23405303 |
T |
|
| Q |
227 |
attaggctatttgatccacacaaaaacaaaa |
257 |
Q |
| |
|
|||||| ||||||||||| | ||||| |||| |
|
|
| T |
23405304 |
attaggatatttgatccaaaaaaaaaaaaaa |
23405334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 23919539 - 23919483
Alignment:
| Q |
129 |
cttagcacggttgctagggacgttgcataatatatgtagaggtcgaggttcgaatcc |
185 |
Q |
| |
|
|||||| | |||| ||||||| |||||||||||||| || ||||| ||||||||||| |
|
|
| T |
23919539 |
cttagctcagttggtagggacattgcataatatatggaggggtcggggttcgaatcc |
23919483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 19356205 - 19356249
Alignment:
| Q |
196 |
acttgttcaccttaaaattggatttctagccattaggctatttga |
240 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
19356205 |
acttgttcaccttaaaaagtgatttctagccactaggctatttga |
19356249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 31183983 - 31184015
Alignment:
| Q |
152 |
tgcataatatatgtagaggtcgaggttcgaatc |
184 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
31183983 |
tgcataatatatgtagaggtcgatgttcgaatc |
31184015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University