View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_7 (Length: 584)
Name: NF12598_low_7
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 336
Target Start/End: Complemental strand, 40287112 - 40286789
Alignment:
| Q |
13 |
atgaatatgaaaggaacctcactagttgtagaatattagaattattaatagtcaatacctattaaagatgactttataaaattgttacatttatttgttc |
112 |
Q |
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| T |
40287112 |
atgaatatgaaaggaacctcactagttgtagaatattagaattattaatagtcaatagctattaaagatgactttataaaattgttacatttatttgttc |
40287013 |
T |
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| Q |
113 |
gtaaattaattttcttaatctatatctttgaaaaaaggtaattgcacatatgtgcattgaaaatgtgcattagcatgatgatgatgattggatagatagt |
212 |
Q |
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| T |
40287012 |
ataaattaattttcttaatctatatctttgaaaaaaggtaattgcacatatgtgcattgaaaatgtgcattagcatgatgatgatgattggatagatagt |
40286913 |
T |
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| Q |
213 |
taccttccaagagcaaatgttcaccactcattcatacatacatcacccataataagccaattttgttcctgacatggctttactttccaactaagcacca |
312 |
Q |
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| T |
40286912 |
taccttccaagagcaaatgttcaccactcattcatacatacatcacccataataagccaattttgttcctgacatggctttactttccaactaagcacca |
40286813 |
T |
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| Q |
313 |
gctagataacacacttatctacct |
336 |
Q |
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| T |
40286812 |
gctagataacacacttatctacct |
40286789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 356 - 566
Target Start/End: Complemental strand, 40286763 - 40286554
Alignment:
| Q |
356 |
accgtttcatcaacccaatccatatctcttactattctatcttcttcctaagattcaatacaatggcctctctttcagccacctctcttacctttcaacc |
455 |
Q |
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| T |
40286763 |
accgtttcatcaacccaatccatatctcttactattctatcttcttcctaagcttcaatacaatggcctctctttcagccacctctcttacctttcaacc |
40286664 |
T |
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| Q |
456 |
ctctttcaaattctctacaagcactaaccaggttcaaatttttcatcttcctctcttaatgcacatacttacttcttatttatttgtatctacacttcaa |
555 |
Q |
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| T |
40286663 |
ctctttcaaattctctacaagcactaaccaggttcaaa-ttttcatcttcctctcttaatgcacatacttacttcttatttatttgtatctacacttcaa |
40286565 |
T |
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| Q |
556 |
taggttcgtgt |
566 |
Q |
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| T |
40286564 |
taggttcgtgt |
40286554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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