View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_71 (Length: 278)
Name: NF12598_low_71
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_71 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 33793018 - 33793272
Alignment:
| Q |
16 |
gatttcaccacacgtacatctattttcgataaatactcactcttctcatttatttattcgaccatgagctcatcttattttgctgggtcaaatgtgttat |
115 |
Q |
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| T |
33793018 |
gattttaccacacgtacatctatttgcgttaaatactcactcttctcatttatttattcgaccatgagctcatcttattttgctgggtcaaatgtgttat |
33793117 |
T |
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| Q |
116 |
gcctgttattatgggttacatgctaaatatatggagcagttttccactcacttatgagggacgtgaatcacgtgattgtcatggatgtagctatacaaa- |
214 |
Q |
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| T |
33793118 |
gcctgttattatgggttacatgctaaatatatggagcagttttccactcacttattaggg---------acgtgattgtcatggatgtagctatacaaat |
33793208 |
T |
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| Q |
215 |
------taatgcctcttattctaaattatgttagtacatggtctacttcacgtcttcttctctc |
272 |
Q |
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| T |
33793209 |
gtatattaatgcctcttattctaaattatgttagtacatggcctacttcacgtcttcttctctc |
33793272 |
T |
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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 8312000 - 8311924
Alignment:
| Q |
95 |
ttgctgggtcaaatgtgttatgcctgttattatgggttacatgctaaatatatggagcagttttccactcacttatg |
171 |
Q |
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| T |
8312000 |
ttgctgggtcaaaagtattatgcctattatcatgggttacttgctaaatacaaggagcagttttccactcacttatg |
8311924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 26251004 - 26251078
Alignment:
| Q |
95 |
ttgctgggtcaaatgtgttatgcctgttattatgggttacatgctaaatatatggagcagttttccactcactta |
169 |
Q |
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| T |
26251004 |
ttgctaggtcaaaggtgttatgcctacttttatgagttacttgctaaatataaggagcagttttccactcactta |
26251078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 27977800 - 27977714
Alignment:
| Q |
95 |
ttgctgggtcaaatgtgttatgcctgttatt-atgggttacatgctaaatatatggagcag-ttttccactcacttatgagggacgt |
179 |
Q |
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| T |
27977800 |
ttgctgggtcaaaggtgttatgcctatttttcatgggttacttgctaaatataaggagcagtttttccactaacttaagggggacgt |
27977714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 28064328 - 28064242
Alignment:
| Q |
95 |
ttgctgggtcaaatgtgttatgcctgttatt-atgggttacatgctaaatatatggagcag-ttttccactcacttatgagggacgt |
179 |
Q |
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| T |
28064328 |
ttgctgggtcaaaggtgttatgcctatttttcatgggttacttgctaaatataaggagcagtttttccactaacttaagggggacgt |
28064242 |
T |
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