View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_74 (Length: 275)
Name: NF12598_low_74
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_74 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 40505738 - 40505995
Alignment:
| Q |
1 |
agacaaaaagaatgttgttgactttgtttgcttgagaatatgttcccaaagcagcaggtgctttttctgtttcaacagcttccttaattcctattcctac |
100 |
Q |
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| T |
40505738 |
agacaaaaagaatgttgttgactttgtttgcttgagaatatggtcccaaagcagcaggtgctttttctgtttcaacagcttccttaattcctattcctac |
40505837 |
T |
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| Q |
101 |
aatcaatcaaacccaacaagcactaaatcatagatttatacattcctcaatccatgatcagaattaacgttaacattaggaaaaacaatgacccgtattg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40505838 |
aatcaatcaaacccaacaagcactaaatcatagatttatacattcctcaatccatgatcagaattaacgttaacattaggaaaaacaattacccgtattg |
40505937 |
T |
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| Q |
201 |
taaaaaatgtaactttattgattttggtggaaaatgcaatgaagaagaaatggtgggt |
258 |
Q |
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| T |
40505938 |
taaaaaatgtaactttattgattttggtggaaaatgcaatgaagaagaaatggtgggt |
40505995 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 20483088 - 20483172
Alignment:
| Q |
1 |
agacaaaaagaatgttgttgactttgtttgcttgagaatatgttcccaaagcagcaggtgctttttctgtttcaacagcttcctt |
85 |
Q |
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||||||| |||| ||||||| ||||| ||||||||||||| | |||||| || || || ||||||||||| |||||||||||| |
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| T |
20483088 |
agacaaatagaaggttgttggctttgattgcttgagaatacggtcccaatgctgctggggctttttctgtcgaaacagcttcctt |
20483172 |
T |
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