View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_78 (Length: 263)
Name: NF12598_low_78
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_78 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 33517275 - 33517037
Alignment:
| Q |
12 |
ttggacatgtaaaagagaggagcaaaatagtgtaaacacaacatgcataaaccatttttgcattttcattcaactat------tggagcaagaacattat |
105 |
Q |
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| T |
33517275 |
ttggacatgtaaaagagagaagcaaaatagtgtaaacacaacatgcataaaccatttttgcattttcattcaactgtagagtgtggagcaaacacattat |
33517176 |
T |
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| Q |
106 |
cagaggcaaatatattcttatcaattatttatgatatagggcccatatatattgcaagttgttaggtaattaaattcatataacaatgatatgtttatca |
205 |
Q |
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| T |
33517175 |
cagaggtaaatatattct-atcaattatttatgacatatggcccatatatattgcaagttgttaggtaattagattcatataacaatgatgtgtgtatca |
33517077 |
T |
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| Q |
206 |
tatgatgccacattgaactcgtggaaaatgattacgacag |
245 |
Q |
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| T |
33517076 |
tatgatgccacattgaactcgtggaaaatgattacgacag |
33517037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 12 - 172
Target Start/End: Original strand, 33499746 - 33499906
Alignment:
| Q |
12 |
ttggacatgtaaaagagaggagcaaaatagtgtaaacacaacatgcataaaccatttttgcattttcattcaactattggagcaagaacattatcagagg |
111 |
Q |
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| T |
33499746 |
ttggacatgtaaaagagagaagcaaaatagtgtaaacacaacatgcataaaccatttttgcattttcattcaactattggagcaagaacattatcagagg |
33499845 |
T |
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| Q |
112 |
caaatatattcttatcaattatttatgatatagggcccatatatattgcaagttgttaggt |
172 |
Q |
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| T |
33499846 |
caaatatattcttatcaattatttatgatatagggcccatttatattgtaagctgttaggt |
33499906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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