View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_79 (Length: 260)
Name: NF12598_low_79
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_79 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 47162696 - 47162477
Alignment:
| Q |
13 |
gagaagaacacaagacatagagatatctgaaagttgagataacaaatcaattatagtaatattacttactattctgggggtaaaacctttagatgaaatg |
112 |
Q |
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| T |
47162696 |
gagaagaacaaaagacatagagatatctgaaagttgagatcacaaatcaattatagtaatattacttactattctgggagtaaaacctttagatgaaatg |
47162597 |
T |
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| Q |
113 |
aaactagtactctcctaagtttggtttctgtaacaaatcgtaccaagaaactggtcttgtctggttggaaac---ataacttgaataaactgtttgaaat |
209 |
Q |
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| T |
47162596 |
aaactagtactctcctaagtttggtttctgtaacaaatcgtaccaagaaactggtcttgtctggttggaaacataataacttgaataaactgtttgaaat |
47162497 |
T |
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| Q |
210 |
ctagagtctcctttcattca |
229 |
Q |
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| T |
47162496 |
ctagagtctcccttcattca |
47162477 |
T |
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