View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_8 (Length: 581)
Name: NF12598_low_8
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 4e-89; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 102 - 268
Target Start/End: Original strand, 47321149 - 47321315
Alignment:
| Q |
102 |
taccaagtaaaaatcaaggttaaaagacaatctcacaacattaactaactactgctaaatttaaaataactttgatttctctatttgtaatcaaagcatg |
201 |
Q |
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| T |
47321149 |
taccaagtaaaaatcaaggttaaaagacaatctcacaacattaactaactactgctaaatttaaaataactttgatttctctatttgtaatcaaagcatg |
47321248 |
T |
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| Q |
202 |
accaactgtattacacatagaaagcaaattcacataaatcataaacaaattcctcacattattataa |
268 |
Q |
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| T |
47321249 |
accaactgtattacacatagaaagcaaattcacataaatcataaacaaattcctcacattattataa |
47321315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 462 - 572
Target Start/End: Original strand, 47321319 - 47321430
Alignment:
| Q |
462 |
ttctccaattgttccagcttcttcgatctttctgtgtcagcttcacctgttccaactcttacagctttgaaaagcttcaatatttct-aaaattccatca |
560 |
Q |
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| T |
47321319 |
ttctccaattgttccagcttcttcgatctttctgtgtcagcttcacctgttccaactcttacagctttgaaaagcttcaatatttctaaaaaatccatca |
47321418 |
T |
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| Q |
561 |
ttcttctcactc |
572 |
Q |
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| T |
47321419 |
ttcttttcactc |
47321430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 47321039 - 47321129
Alignment:
| Q |
19 |
accaaatcctacacaaa--ccaatttaccttcaaatctcattcacagataattgaagccataaactcatttttaatcaagttatataccaa |
107 |
Q |
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| T |
47321039 |
accaagtcctacacaaaaaccactttaccttcaaatctcattcacaaataattgaagccataaactcatttttaatcaagttatataccaa |
47321129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 47317870 - 47317908
Alignment:
| Q |
156 |
ctaaatttaaaataactttgatttctctatttgtaatca |
194 |
Q |
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| T |
47317870 |
ctaaatttaaagtaactttgatttatctatttgtaatca |
47317908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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