View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_81 (Length: 255)
Name: NF12598_low_81
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_81 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 2 - 250
Target Start/End: Original strand, 37872885 - 37873133
Alignment:
| Q |
2 |
attagtgtataatatactctaattagaactttgaaatatatcaaaaatattttccattccatacagcctttcctatacatcaattattgaatgccacaaa |
101 |
Q |
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| T |
37872885 |
attagtgtataatatactctaattagaactttgaaatatatcaaaaatattttccattccatacagcctttcctatacatcaattattgaatgccacaaa |
37872984 |
T |
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| Q |
102 |
taggcctgccttttttacaagattcagatgaaattcatttaatgataactttatacaagtgtcacaaataatgcattgacattgaattattgaaagcttt |
201 |
Q |
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| T |
37872985 |
taggcctgccttttttacaagattcagatgaaattcatttaatgataactttatacaagtgtcacaaataatgcattgacattgaattattgaaagcttt |
37873084 |
T |
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| Q |
202 |
catttacataataatgatgtatgattgagttcctttacttgatgtccat |
250 |
Q |
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| T |
37873085 |
catttacataataatgatgtatgattgagttcctttacttgttgtccat |
37873133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 37868810 - 37868871
Alignment:
| Q |
113 |
tttttacaagattcagatgaaattcatttaatgataactttatacaagtgtcacaaataatgca |
176 |
Q |
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| T |
37868810 |
ttttgacaagattcaaatgaaatttatctaatgataacctgata--agtgtcacaaataatgca |
37868871 |
T |
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