View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_93 (Length: 240)
Name: NF12598_low_93
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_93 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 37504781 - 37505004
Alignment:
| Q |
17 |
atatatactaagatcatattatatatatacctgagctatagtcttgccatgagcatcagccaattctttgagtatatcattgtccatcactaaattagca |
116 |
Q |
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| T |
37504781 |
atatacactaagatcatattatatatgtacctgagctatagtcttgccatgagcatcagccaattctttgagtatatcattgtccatcactaaattagca |
37504880 |
T |
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| Q |
117 |
cccctgctagcacctttcctaaggggtgagaaggcagttaccacaatacccttttccttgcagaaggctctaagtttctcttgttgccatccaaggttga |
216 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37504881 |
cccctgctagcacccttcctaaggggtgagaaggcagttaccacaatacccttttccttgcagaaggctctaagtttctcttgttgccatccaaggttga |
37504980 |
T |
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| Q |
217 |
cttccacctattaggatccaaatt |
240 |
Q |
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| T |
37504981 |
cttccacctattaggatccaaatt |
37505004 |
T |
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