View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_94 (Length: 239)
Name: NF12598_low_94
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_94 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 7714223 - 7714432
Alignment:
| Q |
14 |
caaaggagaagttttttgaatggttcctcaatcctcttttgatcattaaagatcaaatcaaagctgaaaatctttctgtgtcagaagaggactacctttg |
113 |
Q |
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| T |
7714223 |
caaaggagaagttttttgaatggttccttaatcctcttttgatcattaaagatcaaatcaaagctgaaaatctttctgtgtcagaagaggactacctttg |
7714322 |
T |
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| Q |
114 |
taaattagttctcttcaatggtgatcttgatagggtaaaaaatttaacttttggtcctcctcccgaatccgaccgcaaactagccgagctcgatgcattg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7714323 |
caaattagttctcttcaatggtgatcttgatagggtaaaaaatttaacttttggtcctcctcccgaatccgaccgcaaactagccgagctcgacgcattg |
7714422 |
T |
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| Q |
214 |
gctagaaggt |
223 |
Q |
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|||||||||| |
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| T |
7714423 |
gctagaaggt |
7714432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 11208830 - 11208721
Alignment:
| Q |
19 |
gagaagttttttgaatggttcctcaatcctcttttgatcattaaagatcaaatcaaagctgaaaatctttctgtgtcagaagaggactacctttgtaaat |
118 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||| |||||||| |||||||| || |||| |
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| T |
11208830 |
gagaaattttttgaatggttcctcaatcctcttttgatcattaaagaacaaattaaagctgaaaatctatctgcctcagaagaagactacctctgcaaat |
11208731 |
T |
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| Q |
119 |
tagttctctt |
128 |
Q |
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|||||||||| |
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| T |
11208730 |
tagttctctt |
11208721 |
T |
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