View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_97 (Length: 236)
Name: NF12598_low_97
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_97 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 41013285 - 41013507
Alignment:
| Q |
1 |
atgttttttagtgccctatatctttttataggacttagcatcaatgtatatcctgtattattgaatcaaactttggtaataactcaatatgatgtgttta |
100 |
Q |
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| T |
41013285 |
atgttttttagtgccctatatctttttataggacttagcatccatgtatatcatgtattattgaatcaaactttggtaataactctatatgatgtgttta |
41013384 |
T |
|
| Q |
101 |
tagttctataatctctttgatgtgaatttgggacaataatgaagtgctctacaattgg-nnnnnnnnnnncttggtacattgtaccgaatttggtttcaa |
199 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41013385 |
tagttatataatctctttgatgtgaatttgggacaataatgaagtgctctacaattggttttttttttttcttggtacattgtaccgaatttggtttcaa |
41013484 |
T |
|
| Q |
200 |
gttcaactaataaaggcaaaagt |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
41013485 |
gttcaactaataaaggcaaaagt |
41013507 |
T |
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