View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12598_low_99 (Length: 231)
Name: NF12598_low_99
Description: NF12598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12598_low_99 |
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Alignment Details
Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 9887286 - 9887182
Alignment:
| Q |
25 |
acctgggattgaatcgcaagcttaacataatgaatatcaattgcagacttgctagcatgctctaaataaacttgagtgtctgttaacacatcaataactt |
124 |
Q |
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| T |
9887286 |
acctgggattgaatcacaagcttaacataatgaatatcaattgcagacttgctagcatgctctaaataaacttgagtgtctgttaacacatcaataactt |
9887187 |
T |
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| Q |
125 |
atcaa |
129 |
Q |
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| T |
9887186 |
atcaa |
9887182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 9887120 - 9887031
Alignment:
| Q |
126 |
tcaacaaagacttgaatatgccaagggatgcaaagattgtgcaatctttaaatttattgaaatcaatgggtgtggaagaatatgaacctt |
215 |
Q |
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| T |
9887120 |
tcaacaaagacttgaatatgccaagggatgaaaagattgtgcaatctttaaatttgttgaaatcaatgggtgtgaaagaatatgaacctt |
9887031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 9886915 - 9886988
Alignment:
| Q |
45 |
cttaacataatgaatatcaattgcagacttgctagcatgctctaaataaacttgagtgtctgttaacacatcaa |
118 |
Q |
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| T |
9886915 |
cttaacatcatgaatatcaattgcagacttgctagcatgctctgaatacacttgggcatctgttaacacatcaa |
9886988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 9887117 - 9887153
Alignment:
| Q |
182 |
ttgaaatcaatgggtgtggaagaatatgaaccttgtg |
218 |
Q |
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| T |
9887117 |
ttgaagtcaataggtgtggaagaatatgaaccttgtg |
9887153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 50747569 - 50747468
Alignment:
| Q |
17 |
tgaagttaacctgggattgaatcgcaagcttaacataatgaatatcaattgcagacttgctagcatgctctaaataaacttgagtgtctgttaacacatc |
116 |
Q |
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| T |
50747569 |
tgaagttgacctgggattgaatggccagcttaacatcatcaacatcaattgcaggcttgccagcatgctctgaatacacctgggcatctgttaacacatc |
50747470 |
T |
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| Q |
117 |
aa |
118 |
Q |
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|| |
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| T |
50747469 |
aa |
50747468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 50747355 - 50747424
Alignment:
| Q |
139 |
gaatatgccaagggatgcaaagattgtgcaatctttaaatttattgaaatcaatgggtgtggaagaatatgaacct |
214 |
Q |
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||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
50747355 |
gaatatgccaagggatgcaaagattatgcagtctttg------ttgaaatcaatgggtgtggaagaatatgaacct |
50747424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 4328503 - 4328604
Alignment:
| Q |
17 |
tgaagttaacctgggattgaatcgcaagcttaacataatgaatatcaattgcagacttgctagcatgctctaaataaacttgagtgtctgttaacacatc |
116 |
Q |
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||||||| |||||||||||||| || |||||||||| || || ||||||||||| ||||| |||||||||| |||| || || | |||||||||||||| |
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| T |
4328503 |
tgaagttgacctgggattgaatggccagcttaacatcatcaacatcaattgcaggcttgccagcatgctctgaatacacctgggcatctgttaacacatc |
4328602 |
T |
|
| Q |
117 |
aa |
118 |
Q |
| |
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|| |
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| T |
4328603 |
aa |
4328604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 4328717 - 4328648
Alignment:
| Q |
139 |
gaatatgccaagggatgcaaagattgtgcaatctttaaatttattgaaatcaatgggtgtggaagaatatgaacct |
214 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
4328717 |
gaatatgccaagggatgcaaagattgtgcagtctttg------ttgaaatcaatgggtgtggaagaatatgaacct |
4328648 |
T |
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