View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12599_high_15 (Length: 404)
Name: NF12599_high_15
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 352
Target Start/End: Original strand, 29353687 - 29354023
Alignment:
| Q |
16 |
ttcactgtgatggagctttatttggaatcatgttgccttttatccaacaagtaagttatagttctttacataaaaattacttatcaacacacacatttct |
115 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29353687 |
ttcattgtgatggagctttatttggaatcatgttgccttttatccaacaagtaagttatagttctttacataaaatttacttatcaacacacacatttct |
29353786 |
T |
|
| Q |
116 |
attggtagattgaaattagggttttgattattgttgttataattcatgccataggtacaaatgattatatatgtcaaaaggataatgtaccttagagggt |
215 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29353787 |
atcggtggattgaaattagggttttgattattgttgttataattcatgccataggtacaaaggattatatatgtcaaaaggataatgtaccttagagggt |
29353886 |
T |
|
| Q |
216 |
catgtacccgagaggatgatgtaccctatagggtcaccatccagagggtcaccacaatggatgtgttggttccctagtctaatgtccagttgttatgatc |
315 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29353887 |
tatgtacccgagaggatgatgtaccctagagggtcaccatccagagtgtcaccacaatggatgtgttggttccctagtctaatgtctagttgttatgatg |
29353986 |
T |
|
| Q |
316 |
tatatgctttagattagaacaagtttgttagaagtta |
352 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29353987 |
catatgctttagattagaactagtttgttagaagtta |
29354023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 29340732 - 29340806
Alignment:
| Q |
16 |
ttcactgtgatggagctttatttggaatcatgttgccttttatccaacaagtaagttatagttctttacataaaa |
90 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||| | |||||||||||| ||||||||||||||| |
|
|
| T |
29340732 |
ttcattgtgatggagctctatttggaatcatgttgccttttatcaaccaagtaagttatggttctttacataaaa |
29340806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 378
Target Start/End: Complemental strand, 2607895 - 2607859
Alignment:
| Q |
342 |
gttagaagttagttggataagattgagttagttagtt |
378 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2607895 |
gttagaagttagttggatgagattgagttagttagtt |
2607859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 44660929 - 44660848
Alignment:
| Q |
16 |
ttcactgtgatggagctttatttggaatcatgttgccttttatccaacaagtaagttatagttctttacataaaaattactt |
97 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
44660929 |
ttcactgtgatggagctctatttggaattatgttgccttttataaaacaagtaagttactgttctttacataaatattactt |
44660848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 44683989 - 44683933
Alignment:
| Q |
16 |
ttcactgtgatggagctttatttggaatcatgttgccttttatccaacaagtaagtt |
72 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||| ||||||| |||| |
|
|
| T |
44683989 |
ttcactgtgatggagctctatttggaattatgttgccttttataaaacaagtgagtt |
44683933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 344 - 382
Target Start/End: Original strand, 34015873 - 34015911
Alignment:
| Q |
344 |
tagaagttagttggataagattgagttagttagttagtt |
382 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34015873 |
tagaagttagttgaataagattgagttagttagttagtt |
34015911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 379
Target Start/End: Original strand, 38163088 - 38163120
Alignment:
| Q |
347 |
aagttagttggataagattgagttagttagtta |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
38163088 |
aagttagttggataagattgagttagttagtta |
38163120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 2060339 - 2060293
Alignment:
| Q |
305 |
ttgttatgatctatatgctttagattagaacaagtttgttagaagtt |
351 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
2060339 |
ttgttatgatgtatatactttagattagtacaagtttgttagaagtt |
2060293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 382
Target Start/End: Original strand, 17070601 - 17070650
Alignment:
| Q |
334 |
acaagtttgttagaagttag-ttggataagattgagttagttagttagtt |
382 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
17070601 |
acaaatttgttagaagttagattggataagattgagtaagttagttagtt |
17070650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 382
Target Start/End: Complemental strand, 17577671 - 17577622
Alignment:
| Q |
334 |
acaagtttgttagaagttag-ttggataagattgagttagttagttagtt |
382 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
17577671 |
acaaatttgttagaagttagattggataagattgagtaagttagttagtt |
17577622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 351
Target Start/End: Complemental strand, 14806413 - 14806355
Alignment:
| Q |
293 |
tctaatgtccagttgttatgatctatatgctttagattagaacaagtttgttagaagtt |
351 |
Q |
| |
|
|||||||| |||||||||||| || || |||||||||| ||||||||||||| ||||| |
|
|
| T |
14806413 |
tctaatgtatagttgttatgatgtacatactttagattaaaacaagtttgttaaaagtt |
14806355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 347 - 378
Target Start/End: Complemental strand, 8850010 - 8849979
Alignment:
| Q |
347 |
aagttagttggataagattgagttagttagtt |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
8850010 |
aagttagttggataagattgagttagttagtt |
8849979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 375
Target Start/End: Original strand, 23509255 - 23509286
Alignment:
| Q |
344 |
tagaagttagttggataagattgagttagtta |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
23509255 |
tagaagttagttggataagattgagttagtta |
23509286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 40740112 - 40740040
Alignment:
| Q |
274 |
ggatgtgttggttccctagtctaatgtccagttgttatgatctatatgctttagattagaacaagtttgttaga |
347 |
Q |
| |
|
|||||||||||||| ||||||| | | |||| |||||||||||||| || ||||||| |||||||||||||| |
|
|
| T |
40740112 |
ggatgtgttggttcattagtctagtctacagt-gttatgatctatatactgtagattatcacaagtttgttaga |
40740040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University