View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12599_high_23 (Length: 332)
Name: NF12599_high_23
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_high_23 |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 121 - 320
Target Start/End: Complemental strand, 26231743 - 26231543
Alignment:
| Q |
121 |
aaaaagaaaaatgctatgaccattaattccccaatactctttgaataacttgagaaaatcaattaagttgaaactcacctgccttatatactaagattaa |
220 |
Q |
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| T |
26231743 |
aaaaagcaaaatgctatgaccattaattccccaaaactctttgaataacttgagaaaatcaattaagttgaaactcacctgccttatatactaagattaa |
26231644 |
T |
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| Q |
221 |
tcttgacatgattattgtgtgaactgagcaa-nnnnnnnngtcaagggtccataccttaattgaaataggtcgtcgcaaattgaatttgttttcttgatg |
319 |
Q |
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| T |
26231643 |
acttgacatgattattgtgtgaactgagcaatttttttttgtcaagggtccatacctaaattgaaataggtcgtggcaaattgaatttgttttcgtgatg |
26231544 |
T |
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| Q |
320 |
t |
320 |
Q |
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| T |
26231543 |
t |
26231543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 26231813 - 26231751
Alignment:
| Q |
19 |
agagttgacttgagggtttaaaatgtttttctctcagaatctcacgttcaatttttctcaggt |
81 |
Q |
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| T |
26231813 |
agagttgacttgatagtttaaagtgtttttctctcagaatctcacgttcaatttttctcaggt |
26231751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 26224066 - 26223983
Alignment:
| Q |
64 |
gttcaatttttctcag-gttaatttcactagactattttcacttctt-aagaaagatataaaaagaaaaatgctatgaccatta |
145 |
Q |
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| T |
26224066 |
gttcaatttttctcagagtcaatttaactagactattttcacttcttaaaaaaaaatatccaaagcgaaatgctatgaccatta |
26223983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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