View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12599_high_32 (Length: 303)
Name: NF12599_high_32
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_high_32 |
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| [»] scaffold0444 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 297
Target Start/End: Original strand, 35984796 - 35985072
Alignment:
| Q |
19 |
cttgtaagcgtaacaattacgttaaaaacccactatattacgtcatttt-ttattagaacactttacaaaaatcacgggtattaagataagttgttggag |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35984796 |
cttgtaagtgtaacaattacgttaaaaacccactatattacgccatttttttattagaacactttacaaaaatcacgggtattaagataagttgttggag |
35984895 |
T |
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| Q |
118 |
gaagtactttatccattcaaaactatatgtcattcaagtaaaatttgtttgtttccacaaaacttgcttgtgaagtgaaaattattttatgatcaattat |
217 |
Q |
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| T |
35984896 |
gaagtacttcatccattccaaattatatgtcattcaagtaaaatttgtttatttccacaaaacttgtttgtgaagtgaaaattattttatgatcaattat |
35984995 |
T |
|
| Q |
218 |
gattcaagatgttaatgagttattatattttcatcaatatttatcgtatgatgatatataccgttacgatttcttctctc |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||| |
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| T |
35984996 |
gattcaagatgttaatgagttattatattttcatcaatatttatcat---atgatatataccgttacaatttcttctctc |
35985072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 15013773 - 15013736
Alignment:
| Q |
80 |
tttacaaaaatcacgggtattaagataagttgttggag |
117 |
Q |
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| T |
15013773 |
tttacaaaaatcacgggtattaaaaaaagttgttggag |
15013736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 22835296 - 22835251
Alignment:
| Q |
64 |
ttttttattagaacactttacaaaaatcacgggtattaagataagt |
109 |
Q |
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| T |
22835296 |
ttttttataagaacactttacaaaaatcacgtgtcttaagaaaagt |
22835251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 44124148 - 44124111
Alignment:
| Q |
80 |
tttacaaaaatcacgggtattaagataagttgttggag |
117 |
Q |
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|||||||||||||| |||||||||| |||||||||||| |
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| T |
44124148 |
tttacaaaaatcacaggtattaagaaaagttgttggag |
44124111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 44441247 - 44441207
Alignment:
| Q |
73 |
agaacactttacaaaaatcacgggtattaagataagttgtt |
113 |
Q |
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|||| |||||||||||||||||||||||| || |||||||| |
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| T |
44441247 |
agaatactttacaaaaatcacgggtattatgaaaagttgtt |
44441207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0444 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0444
Description:
Target: scaffold0444; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 6060 - 6020
Alignment:
| Q |
73 |
agaacactttacaaaaatcacgggtattaagataagttgtt |
113 |
Q |
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|||| |||||||||||||||||||||||| || |||||||| |
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| T |
6060 |
agaatactttacaaaaatcacgggtattatgaaaagttgtt |
6020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 16388709 - 16388657
Alignment:
| Q |
65 |
tttttattagaacactttacaaaaatcacgggtattaagataagttgttggag |
117 |
Q |
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||||||| |||||| || |||||||| || |||||||||| |||||||||||| |
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| T |
16388709 |
tttttatcagaacatttaacaaaaattacaggtattaagaaaagttgttggag |
16388657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 4524141 - 4524097
Alignment:
| Q |
73 |
agaacactttacaaaaatcacgggtattaagataagttgttggag |
117 |
Q |
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|||||||| || ||||| |||||||||||||| |||||||||||| |
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| T |
4524141 |
agaacactctaaaaaaaacacgggtattaagaaaagttgttggag |
4524097 |
T |
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