View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12599_high_33 (Length: 298)
Name: NF12599_high_33
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 42769370 - 42769638
Alignment:
| Q |
19 |
accaagagtaacataactagtgaattctctatccgttgtacttgcagcaactgtgatcgaccacggttccaagttggatgcagttttgggtttaggtcct |
118 |
Q |
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| T |
42769370 |
accaagagtaacataactagtgaattctctatccgttgtacttgcagcaactgtgatcgaccacggttccaagttggatgcagttttgggtttaggtcct |
42769469 |
T |
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| Q |
119 |
gtatttccagcagaactaactacaacaatgccattagcaactgcatggaaagaccctatagcaatactgctttcataaaattctacgggatcaccaccca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769470 |
gtatttccagcagaactaactacaacaatgccattagcaactgcatggaaagaccctatagcaatactgctttcataaaattctacgggatcaccaccca |
42769569 |
T |
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| Q |
219 |
cagacgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaatgtccgcttcat |
287 |
Q |
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| T |
42769570 |
cagacgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaatgtctgcttcat |
42769638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 42716887 - 42717147
Alignment:
| Q |
19 |
accaagagtaacataactagtgaattctctatccgttgtacttgcagcaactgtgatcgaccacggttccaagttggatgcagttttgggtttaggtcct |
118 |
Q |
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| T |
42716887 |
accaagggtaacaaaactagtgaactctctatcaattgtacttgcagcaactgtaaacacccatggttccaagttggatacagtactaggagcaggtcct |
42716986 |
T |
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| Q |
119 |
gtatttccagcagaactaactacaacaatgccattagcaactgcatggaaagaccctatagcaatactgctttcataaaattctacggg---atcaccac |
215 |
Q |
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| T |
42716987 |
gaatttcctccagcagccacaacaattatgttattggcaactgcatggaaagaccctatggaaatactgctatcgtaaaattcaacaggaaaatcaccac |
42717086 |
T |
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| Q |
216 |
ccacagacgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaat |
276 |
Q |
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| T |
42717087 |
ccaaagacactgaaagcacgtcgacaccatcacttatggcagcttcaaaaccagccaaaat |
42717147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 155 - 276
Target Start/End: Complemental strand, 42734862 - 42734738
Alignment:
| Q |
155 |
gcaactgcatggaaagaccctatagcaatactgctttcataaaattctacggga---tcaccacccacagacgccgaaatcacatcaacaccgtcaagta |
251 |
Q |
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| T |
42734862 |
gcaactgcatggaaagaccctatggaaatactgctatcgtgaaattcaacaggaaaatcaccactcaaagacactgaaagcacatcaacaccatcactta |
42734763 |
T |
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| Q |
252 |
tggcagcttcgaaaccagccaaaat |
276 |
Q |
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| T |
42734762 |
tggcagcttcaaaaccagccaaaat |
42734738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 42762493 - 42762576
Alignment:
| Q |
19 |
accaagagtaacataactagtgaattctctatccgttgtacttgcagcaactgtgatcgaccacggttccaagttggatgcagt |
102 |
Q |
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||||||| |||||||||| ||||| |||||||| |||| |||||||||||||||| || ||| ||||||||||||||| |||| |
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| T |
42762493 |
accaagaataacataacttgtgaaatctctatcaattgtgcttgcagcaactgtgagcgtccaaggttccaagttggatacagt |
42762576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 279
Target Start/End: Original strand, 42762690 - 42762759
Alignment:
| Q |
210 |
caccacccacagacgccgaaatcacatcaacaccgtcaagtatggcagcttcgaaaccagccaaaatgtc |
279 |
Q |
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||| ||||| |||| |||||| |||||||||||| ||| |||||||||||| ||||||||||||||||| |
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| T |
42762690 |
cactacccaaagacaccgaaagcacatcaacaccatcacttatggcagcttcaaaaccagccaaaatgtc |
42762759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 42743512 - 42743582
Alignment:
| Q |
19 |
accaagagtaacataactagtgaattctctatccgttgtacttgcagcaactgtgatcgaccacggttcca |
89 |
Q |
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||||||| |||||||||| ||||| |||||||| |||| |||||||||||||||| || ||| ||||||| |
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| T |
42743512 |
accaagaataacataacttgtgaaatctctatctattgtgcttgcagcaactgtgagcgtccaaggttcca |
42743582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 42752871 - 42752941
Alignment:
| Q |
19 |
accaagagtaacataactagtgaattctctatccgttgtacttgcagcaactgtgatcgaccacggttcca |
89 |
Q |
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||||||| |||||||||| ||||| |||||||| |||| |||||||||||||||| || ||| ||||||| |
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| T |
42752871 |
accaagaataacataacttgtgaaatctctatctattgtgcttgcagcaactgtgagcgtccaaggttcca |
42752941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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