View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12599_high_39 (Length: 249)
Name: NF12599_high_39
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 51482592 - 51482833
Alignment:
| Q |
1 |
cccatttattgataccttcatctgcactgaacaagccagttgggtttttcaaaggagcgggtggttgtgtttgagttggatttgtatctgagatgtaaag |
100 |
Q |
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| T |
51482592 |
cccatttattgataccttcatctgcactgaacaagccagttgggtttttcaaaggagcgggtggttgtgtttgagttggatttgtatctgagatgtaaag |
51482691 |
T |
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| Q |
101 |
gtcataagtcattacattaacccaatccaagttgtttgcaacatcttgaccagggtagtattttagtggagttatctgatcagagccacccactgcagca |
200 |
Q |
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| T |
51482692 |
gtcataggtcattacattaacccaatccaagttgtttgcaacatcttgaccagggtagtacttcaatggagttatctgatcagagccacccactgcagca |
51482791 |
T |
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| Q |
201 |
gataacagcagtgctggcttgccggaactcctagattctgtg |
242 |
Q |
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| T |
51482792 |
gataacagcagtgctggcttgccggaactcctagattctgtg |
51482833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 51467682 - 51467921
Alignment:
| Q |
1 |
cccatttattgataccttcatctgcactgaacaagccagttgggtttttcaaaggagcgggtggttgtgtttgagttggatttgtatctgagatgtaaag |
100 |
Q |
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||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
51467682 |
cccattttgtgataccttcatctgcactaaattggccagttgggtttttcaaaggagcgggtggttgtgtttgagttggatttatatctgagatgtaaag |
51467781 |
T |
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| Q |
101 |
gtcataagtcattacattaacccaatccaagttgtttgcaacatcttgaccagggtagtattttagtggagttatctgatcagagccacccactgcagca |
200 |
Q |
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| T |
51467782 |
gtcataggtcattacattaacccaatccaagttgtttgcaacatcttgaccagggtagtattttagtggagttatctgatcagagccacccactgcagca |
51467881 |
T |
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| Q |
201 |
gataacagcagtgctggcttgccggaactcctagattctg |
240 |
Q |
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| T |
51467882 |
gataacaacagttccggcttgtcggaactcctagactctg |
51467921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 10 - 235
Target Start/End: Original strand, 48424109 - 48424334
Alignment:
| Q |
10 |
tgataccttcatctgcactgaacaagccagttgggtttttcaaaggagcgggtggttgtgtttgagttggatttgtatctgagatgtaaaggtcataagt |
109 |
Q |
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|||||||||||||| ||||||| ||| |||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| ||||||||||||| |
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| T |
48424109 |
tgataccttcatctacactgaattggcctgttgggtttttcaaaggagcaggtggttgtgtttgagtttgatacctatctgagatgaaaaggtcataagt |
48424208 |
T |
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| Q |
110 |
cattacattaacccaatccaagttgtttgcaacatcttgaccagggtagtattttagtggagttatctgatcagagccacccactgcagcagataacagc |
209 |
Q |
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||||||||| |||||||||||||||||||||| ||| ||||| |||||||||| | | | |||||||||||||||||||| ||||||||||||||| |
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| T |
48424209 |
cattacattgacccaatccaagttgtttgcaatatcctgacctgggtagtattccaaagagatgatctgatcagagccacccacggcagcagataacagc |
48424308 |
T |
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| Q |
210 |
agtgctggcttgccggaactcctaga |
235 |
Q |
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|||| |||||||| ||||| ||||| |
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| T |
48424309 |
agtgtcggcttgccagaactgctaga |
48424334 |
T |
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