View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12599_high_9 (Length: 534)
Name: NF12599_high_9
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 18 - 523
Target Start/End: Complemental strand, 34975999 - 34975484
Alignment:
| Q |
18 |
ttacttagatttttcccaataaatattgaaacattatctgaatccaaaatagac---tgaggtatatataagaacaattataccctacattctctaattt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34975999 |
ttacttagatttttcccaataaatattgaaacattatctgaatccaaaatagacacctgaggtatatataagaacaatta--ccctacattctctaattt |
34975902 |
T |
|
| Q |
115 |
cattcattaaataagaaaagacagttgttaatatctagtttctaatgaaagattagttaattacaacttttgaagtaggttttgtggggcaaggctgctg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34975901 |
cattcattaaataagaaaagacagttgttaatatctagtttctaatgaaagattagttaattacaacttttgaagtaggttttgtggggcaaggctgctg |
34975802 |
T |
|
| Q |
215 |
ggcca---------ttatcaggtgaaagatcaacatgtagttatttttggaagatttagaaaccaaacactttaagcaattgatcaaatgtttgattaca |
305 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34975801 |
ggccaatagttaaattatcaggtgaaagatcaacatgaagttatttttggaagatttagaaaccaaacactttaagcaattgatcaaatgtttgattaca |
34975702 |
T |
|
| Q |
306 |
tcacttcatcactaaaatgttctccatccccattttattccgcgtctaggaatttttctctttgttctcatcacgaaaatcttccagcatgcaatagaga |
405 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
34975701 |
tcacatcatcactaaaatgttctccatccccattttattccgcgtctaggaatttttctccttgttctcatcacgaaaatcttccagcatgcaacataga |
34975602 |
T |
|
| Q |
406 |
ttaatccttcgaatcttatacaacttaaatggacgacaaactctcccaagttttaacattgttgcatgtacaagattagattcaaaccaagaaccttcgt |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |
|
|
| T |
34975601 |
ttaatccttcgaatcttatacaacttaaatgtacgataaactctcccaagttttaacattgttgcatgtacaagactgaattcaaaccgagaaccttcgt |
34975502 |
T |
|
| Q |
506 |
taaattaaaaagattcat |
523 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
34975501 |
taaattaaaaagattcat |
34975484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University