View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12599_low_13 (Length: 509)
Name: NF12599_low_13
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 55 - 495
Target Start/End: Original strand, 37886067 - 37886510
Alignment:
| Q |
55 |
agggtatatcatccgaaacatgggaactatgattaaataggattgtctgagctaactcgtgaacgacctcattaacttgtcttatatcaaactcgaccgg |
154 |
Q |
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| T |
37886067 |
agggtatatcatccgaaacatgggaactatgattaaatgggattgtctgagctaactcgtgaacaacctgattaacttgtctcgtatcaaactcgacttg |
37886166 |
T |
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| Q |
155 |
agagttctagaaccctacagtgctcatacatgaaaccaggattgcccgattttgattaatgttgttgcaacaactattgaagcagacatgtgaagaataa |
254 |
Q |
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| T |
37886167 |
agagttctagaaccctacaatgctcatacatgaaaccaggattgcccaattttgattaatgttgttgcaacaactattgaagcagacatgtgaagaataa |
37886266 |
T |
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| Q |
255 |
---gttcacatgtcaacaacatttataacctacacaagggatagaaagagtccatgaaacagattcatcaaaccaagttattctgaacgtgaaattcagt |
351 |
Q |
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| T |
37886267 |
atagttcacatgtcaacaacatttataacctacacaagggatagaaagagtccatgaaacagattcatcaaaccaagttattctgaacgtgaaattcagt |
37886366 |
T |
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| Q |
352 |
ttggactttggcgtgatcactaaaatatgctccaaattttacagtggaaattatgaagacaaacaaactatttgataaaattatatacataaaaccgtcc |
451 |
Q |
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| T |
37886367 |
ttggactttggcgtgatcactaaaatatgctccaaattttacagtggaaattatgaagacaaacaaactatttgataaaattgtatacataaaaccgtcc |
37886466 |
T |
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| Q |
452 |
tttgcacatctcaggagtttaatatcaaattctatcttcttgtt |
495 |
Q |
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| T |
37886467 |
tttgcacatctcaggagtttaatatcaaattctatcttcttgtt |
37886510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 9892787 - 9892856
Alignment:
| Q |
94 |
ggattgtctgagctaactcgtgaacgacctcattaacttgtcttatatcaaactcgaccggagagttcta |
163 |
Q |
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| T |
9892787 |
ggattgtatgagctaactcgtgaacgaccccatttacttaccccatattaaactcgacatgagagttcta |
9892856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 29985498 - 29985437
Alignment:
| Q |
101 |
ctgagctaactcgtgaacgacctcattaacttgtcttatatcaaactcgaccggagagttct |
162 |
Q |
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| T |
29985498 |
ctgagctaactcgtgaacgacctcattagcttgtcttctattgaactcgacatgagagttct |
29985437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 6821764 - 6821698
Alignment:
| Q |
85 |
gattaaataggattgtctgagctaactcgtgaacgacctcattaacttgtcttatatcaaactcgac |
151 |
Q |
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| T |
6821764 |
gattaaatgagactgtcggagctaactcgtgaacgacctcattcacttatcttctattaaactcgac |
6821698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 3601235 - 3601288
Alignment:
| Q |
74 |
atgggaactatgattaaataggattgtctgagctaactcgtgaacgacctcatt |
127 |
Q |
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| T |
3601235 |
atggggactatgattagatagggttgtctaagctaactcgtgagcaacctcatt |
3601288 |
T |
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