View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12599_low_14 (Length: 494)
Name: NF12599_low_14
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 442; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 13 - 485
Target Start/End: Original strand, 1482664 - 1483143
Alignment:
| Q |
13 |
agagcaaaaggaaaaggagatttgggctgagcttaatcatcttctgatgatttatagggttccaaaagcaaagaacttggtgatttttccaatctgctta |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1482664 |
agagcaaaaggaaaaggagatttgggctgagcttaatcatcttctgatgatttatagggatccaaaagcaaagaacttggtgatttttccaatctgctta |
1482763 |
T |
|
| Q |
113 |
atcttctgcttgaagattaaagctgtatacattttagatttttccttgcatcaccattctttgatgattttgttgcaattttggtataatccattgtata |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1482764 |
atcttctgcttgaagattaaagctgtatacattttagatttttccttgcatcaccattctttgatgattttgttgcaattttggtataatccattgtata |
1482863 |
T |
|
| Q |
213 |
tattacaatgtatgactataattttgaattgaatgacacctgtttcttttctcttaatcaaattgtttggaattcaccatgactctttgtttgatataat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1482864 |
tattacaatgtatgactataattttgaattgaatgacacctgtttcttttctcttaatcaaattgtttggaattcaccatgactctttgtttgatataat |
1482963 |
T |
|
| Q |
313 |
atattcttctatattaattgataatttttatttgagaggaagcgtggaaagaaagtgtaggtgtatgcatggtcagctaatggtttttgggagttgctgg |
412 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1482964 |
atattcttctatattacttgataatttttatttgagaggaagcgtggaaagaaagtgtaggtgtatgcatggtcagctaatggttttagggagttgctgg |
1483063 |
T |
|
| Q |
413 |
gtaaaatgtgcattgaaccaaattagtgtgtaggatttaa-------gggtttctgggagttgctaggcatgatgtccat |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1483064 |
gtaaaatgtgcattgaaccaaattagtgtgtaggatttaaggattaggggtttctgggagttgctaggcatgatgtccat |
1483143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 13 - 454
Target Start/End: Original strand, 36717391 - 36717859
Alignment:
| Q |
13 |
agagcaaaaggaaaaggagatttgggctgagcttaatcatcttctgatgatttatagggttccaa------aagcaaagaacttggtgatttttccaatc |
106 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||| || |||| | |
|
|
| T |
36717391 |
agagcaaatgggaaaggagatttgggctgagcttaatcatcttctgatgatttatagggcttcaagaaggaaagcagagaacttggtgtttgatccagtt |
36717490 |
T |
|
| Q |
107 |
tgcttaatcttctgcttgaagattaaagctgtatacattttagatttttccttgcatcaccattctttgatgattttgttgcaattttggtataatccat |
206 |
Q |
| |
|
|| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36717491 |
tgtgtaatcttctacttgaagattatagctgtatacattttagatttttccttgcatcatcattctttgatgattttgttgcaattttggtgtaatccat |
36717590 |
T |
|
| Q |
207 |
tgtatatattacaatgtatgactataattttgaattgaatgacacctgtttcttttctcttaatcaaattgtttggaattcaccatgactctttgtttga |
306 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36717591 |
tgtatatattacaatgtatgactatagttttgaatcgaatgacacctatttcttttctcttaatcaaattgtttggaattcaccatgattctttgtttga |
36717690 |
T |
|
| Q |
307 |
tataatatattcttctatattaattgataatttttatt-------------------tgagaggaagcgtggaaagaaagtgtag--gtgtatgcatggt |
385 |
Q |
| |
|
|| |||||| |||| ||||| ||||| ||||| || ||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
36717691 |
taagatatatggttctctattacttgattgttttttttttttttttttttctctttctgagaggaagcgtggaaggaaagtgtagctgtgtatgcatggt |
36717790 |
T |
|
| Q |
386 |
cagctaatggtttttgggagttgctgggtaaaatgtgcattgaaccaaattagtgtgtaggatttaagg |
454 |
Q |
| |
|
| ||| |||||||||||||||||||| |||||||| |||||| |||| | |||||||||||||||| |
|
|
| T |
36717791 |
tgggtaagggtttttgggagttgctgggcaaaatgtgtattgaatcaaaccaatgtgtaggatttaagg |
36717859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 1483267 - 1483329
Alignment:
| Q |
121 |
cttgaagattaaagctgtatacattttagatttttccttgcatcaccattctttgatgatttt |
183 |
Q |
| |
|
||||||||||| || |||| |||||||| ||||||||||||| || |||||| |||||||||| |
|
|
| T |
1483267 |
cttgaagattacagttgtaaacattttaaatttttccttgcaccatcattctatgatgatttt |
1483329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 246
Target Start/End: Original strand, 36717995 - 36718065
Alignment:
| Q |
177 |
tgattttgttgcaattttggtataatccattgtatatattac-aatgtatgactataattttgaattgaat |
246 |
Q |
| |
|
|||| |||||||||||| ||| ||||||||||| |||||||| ||||||| || | |||||||||| |||| |
|
|
| T |
36717995 |
tgatcttgttgcaatttaggtgtaatccattgtctatattacaaatgtatcacaacaattttgaatcgaat |
36718065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University