View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12599_low_16 (Length: 465)
Name: NF12599_low_16
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_16 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: scaffold0022 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Original strand, 96402 - 96837
Alignment:
| Q |
18 |
catcatagtgggcctttctgtgctttctaaattttttgctccgatctgtttcagaatcttaacaatccaaccaaccaaagaaagttcaagtaagataagg |
117 |
Q |
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| T |
96402 |
catcatagtgggcttttctgtgctttctaaattttttgctccgatctgtttcagaatcttaacaatccaaccaaccaaagaaagttcaagtaagataagg |
96501 |
T |
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| Q |
118 |
agaacaagtaattaaccaataaaacagcaaataaacttattaatccaaattcaatcctgaaattgcaatacacaagaatctagtaaaaattgagttttgt |
217 |
Q |
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| T |
96502 |
agaacaagtaattaaccaataaaacagcaaataaacttattaatccaaattcaatcctgaaattgcaatactcaagaatctagtaaaaattgagttttgt |
96601 |
T |
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| Q |
218 |
aatataactattacacaagtatatttatcattaatataaatattcaatccaacagtaagttttttaaaccaagtatcatgcaaagatgtcatctttataa |
317 |
Q |
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| T |
96602 |
aatataactattacacaagtatatttatcactaatataaatattcaatccaacagttagttttttaaaccaagtatcatggaaagatgtcatctttataa |
96701 |
T |
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| Q |
318 |
actcatgccaagcgttatcctatgtgggacttgagtttttaccaatagtcagaaatatgaaatgaagattatatcatagtatcttaccaccaccatcttg |
417 |
Q |
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| T |
96702 |
actcatgccaagcgttatcctatctgggacttgagtttttaccaatagtcagaaatatgaaatgaagaatatatcatagtatcttaccaccaccatcttg |
96801 |
T |
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| Q |
418 |
ttccattgattctagctcatcctcagatgatgtcca |
453 |
Q |
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| T |
96802 |
ttccattgattctagctcatcctcagatgatgtcca |
96837 |
T |
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