View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12599_low_2 (Length: 829)
Name: NF12599_low_2
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 640; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 6 - 809
Target Start/End: Complemental strand, 10784529 - 10783715
Alignment:
| Q |
6 |
ttattgtggttaatgaagctcaacaaaaattagttagttactcccatacaaacttactttttactta-------gtttataaagatgactattgtttgcc |
98 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
10784529 |
ttatagtggttaatgaagctcaacaaaaactagttagttactcccatacaaacttactttttacttattacttagtttataaagatgactattgtaagcc |
10784430 |
T |
|
| Q |
99 |
taaccttaattttatgttatttgaagtttaaataaatgataattccttttaaaaaa---tacatttttatatcaggagtccgtatttaatatttgagcgg |
195 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
10784429 |
taaccttgattttatgttatttgcagtttaaataaatgataattccttttaaaaaaaaatacatttttatatcaggagtccgtatataatatttgagcgg |
10784330 |
T |
|
| Q |
196 |
gatctccaatttttaatattgagctatgctagtatttggtgcaaagaaactcatgtgcaaaatt-aacgaataactagcaaccaatttttaatattgttg |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10784329 |
gatctccaatttttaatattgagctatgcta---tttggtgcaaagaaactcatgtgcaaaatttaacgaataactagcaaccaatttttaatattgttg |
10784233 |
T |
|
| Q |
295 |
taataaaggctaggtagaaaaaccaagagattgtgcctag----gtcgtttgctttatcgtacctcatagcattttcctttaatatttgatagttctgac |
390 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10784232 |
taataaaggctaggta-aaaaagcaagagattgtgcctagctaggtcgtttgctttatcatacctcatagcattttcctttaatatttgatagttctgac |
10784134 |
T |
|
| Q |
391 |
aatgatcacaatttactataggaggagcaatatatcccgggcttaagcttggtaaatgagtttcatccagaaatgagaagagaggatttaactaaacaag |
490 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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|
| T |
10784133 |
aatgatcacaatttactacaggaggagcaacatatccaggacttaagcttggtaaatgagtttcatccagaaatgagaagagaggacttaactaaaaaag |
10784034 |
T |
|
| Q |
491 |
attccatgtctaactccacgggtcgtataacacgatcgaagagtaattcatcccagaagttcaactctttgagtgtaggttctacctctagagagaggga |
590 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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|
| T |
10784033 |
attccatgtctaactccacgggtcgtataacacgatctaagagtaattcatcccagaagttcaactctttgagtgtaggttcttcttctagagagaggga |
10783934 |
T |
|
| Q |
591 |
agataaggaagacggtccatcccataagatcaactgtgttgatggattagttgataagaatccttcttgtttggtgtctactagactcacaactgttaac |
690 |
Q |
| |
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||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10783933 |
agataaggaagacggtccatctcataagatcaactatgttgatggattagttgataagaatccttcttgtttggtgtctactagactcacaactgttaac |
10783834 |
T |
|
| Q |
691 |
cctaaggttcggaagattcctgattttactaagcaacttgggtttgatgatggtgaaaagagaaataggggtgaaatatcttgccctgatttgaaagaag |
790 |
Q |
| |
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||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10783833 |
cctaacgttcggaagaatcctgattttactaagcaacttggttttgatgatggtgaaaagagaaataggggtgaaatatcttgccctgatttgaaagaag |
10783734 |
T |
|
| Q |
791 |
gaagccagggaatgtcacc |
809 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
10783733 |
gaagccagggaatgtcacc |
10783715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 205; Significance: 1e-111; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 6 - 419
Target Start/End: Original strand, 50506962 - 50507383
Alignment:
| Q |
6 |
ttattgtggttaatgaagctcaacaaaaattagttagttactcccatacaaacttactt---tttacttagtttataaagatgactattgtttgcctaac |
102 |
Q |
| |
|
|||| |||||||||| | ||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||| ||||| | |
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|
| T |
50506962 |
ttatagtggttaatggaactcaacaaaaattagttagttactcccgtacaaa-ttacttacttttacttagtttataaagatgactattgttagcctagc |
50507060 |
T |
|
| Q |
103 |
cttaattttatgttatttgaagtttaaataaatgataattccttttaaaaaataca-tttttatatcaggagtccgtatttaatatttgagcgggatctc |
201 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||| || ||||||||||||||| ||||| ||| |||||| |||||||||||||||| ||||||| |
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|
| T |
50507061 |
cttaagtttatgttatttacggtttaaataaatgatattttcttttaaaaaatacattttttttattaggagtttgtatttaatatttgagttggatctc |
50507160 |
T |
|
| Q |
202 |
caatttttaatattgagctatgctagtatttggtgcaaagaaactcatgtgcaaaa-ttaacgaataactagcaaccaattttta----atattgttgta |
296 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| | | || || |||||| | |
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|
| T |
50507161 |
caatttttaatattgaactatgc---tatttggtgcaaagaaactcatgtgcaaaatttaacgaataactagcaaccagtctatacgtgat-ttgttgga |
50507256 |
T |
|
| Q |
297 |
ataaaggctaggtagaaaaaccaagagattgtgcctaggtcgtttgc------tttatcgtacctcatagcattttcctttaatatttgatagttctgac |
390 |
Q |
| |
|
| | ||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50507257 |
a-ataggctaggt-gaaaaagcaagagattgtgcctaggtcgtttgctttttttttatcgtacctcgtagcattttcctttaatatttgatagttctgac |
50507354 |
T |
|
| Q |
391 |
aatgatcacaatttactataggaggagca |
419 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
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|
| T |
50507355 |
aatgatcacaatttactataggaagagca |
50507383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 644 - 809
Target Start/End: Original strand, 50507527 - 50507692
Alignment:
| Q |
644 |
ataagaatccttcttgtttggtgtctactagactcacaactgttaaccctaaggttcggaagattcctgattttactaagcaacttgggtttgatgatgg |
743 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||| ||||||||||| |
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|
| T |
50507527 |
ataaggatccttcttgtttggtgtctactagactcataactgttaaccctaaggttcagaagaatcctgatttcactaagcaacttggttttgatgatgg |
50507626 |
T |
|
| Q |
744 |
tgaaaagagaaataggggtgaaatatcttgccctgatttgaaagaaggaagccagggaatgtcacc |
809 |
Q |
| |
|
||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50507627 |
tgaaaagagcaatagggatcaaatatcttgccctgatttgaaagaaggaagccagggaatgtcacc |
50507692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 460 - 596
Target Start/End: Original strand, 50507394 - 50507527
Alignment:
| Q |
460 |
gaaatgagaagagaggatttaactaaacaagattccatgtctaactccacgggtcgtataacacgatcgaagagtaattcatcccagaagttcaactctt |
559 |
Q |
| |
|
|||| |||||||||||| ||||| || | | |||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||| |
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|
| T |
50507394 |
gaaacgagaagagaggacttaacacaaaaggcttccatgtctaactccacgggtcgtataacacgatctaagagt---tcaacccagaagttcaactctt |
50507490 |
T |
|
| Q |
560 |
tgagtgtaggttctacctctagagagagggaagataa |
596 |
Q |
| |
|
| |||||||||||| | |||||||||||||||||||| |
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|
| T |
50507491 |
tcagtgtaggttcttcttctagagagagggaagataa |
50507527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 12704733 - 12704673
Alignment:
| Q |
19 |
tgaagctcaacaaaaattagttagttactcccatacaaacttactttttacttagtttataa |
80 |
Q |
| |
|
|||| ||||||| || |||||||||| || |||||||||||||| ||||||||| ||||||| |
|
|
| T |
12704733 |
tgaaactcaacacaagttagttagttcctaccatacaaacttac-ttttacttaatttataa |
12704673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 719 - 792
Target Start/End: Original strand, 50475231 - 50475304
Alignment:
| Q |
719 |
ctaagcaacttgggtttgatgatggtgaaaagagaaataggggtgaaatatcttgccctgatttgaaagaagga |
792 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| ||||||| || |||| | ||| |||||||||||||||| |
|
|
| T |
50475231 |
ctaagcaacttgtttttgatgatggtgaagagaccaatagggatggaataattagccttgatttgaaagaagga |
50475304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 9206911 - 9206961
Alignment:
| Q |
11 |
gtggttaatgaagctcaacaaaaattagttagttactcccatacaaactta |
61 |
Q |
| |
|
||||||| ||||| |||||| || |||||||||| |||||||||||||||| |
|
|
| T |
9206911 |
gtggttagtgaagttcaacacaagttagttagttcctcccatacaaactta |
9206961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 56220830 - 56220874
Alignment:
| Q |
35 |
ttagttagttactcccatacaaacttactttttacttagtttataa |
80 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||| ||||||| |
|
|
| T |
56220830 |
ttagttagttcctcccatacaaactta-tttttacttaatttataa |
56220874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 8509495 - 8509446
Alignment:
| Q |
12 |
tggttaatgaagctcaacaaaaattagttagttactcccatacaaactta |
61 |
Q |
| |
|
|||||| |||||||||||| | |||||||||| |||||||||||||||| |
|
|
| T |
8509495 |
tggttagtgaagctcaacacaggttagttagtttctcccatacaaactta |
8509446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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