View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12599_low_20 (Length: 433)
Name: NF12599_low_20
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 45 - 428
Target Start/End: Complemental strand, 9390050 - 9389667
Alignment:
| Q |
45 |
tttcaattgttttctttttcatttctgattctgcattttctcaatcccatgttattccatttctaggttcttctccatccagaacaagacagagttctta |
144 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9390050 |
tttcaatttttttctttttcatttctgattctgcattttctcaatcccatgttattccatttccaggttcttctccatccagaacaagacagagttctta |
9389951 |
T |
|
| Q |
145 |
gtattcgagagaatgcaaggctacaaggatttccagactgctataagctttgtggccctgtcaaacagaggtatgtgtttgaactggtatcttatcttga |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9389950 |
gtattcgagagaatgcaaggctacaaggatttccagactgctataagctttgtggccctgtcaaacagaggtatgtgtttgaactggtatcttatcttga |
9389851 |
T |
|
| Q |
245 |
gttaattaatgaaagatataagcagaattttgttagagaacttatatagccttgtatccacaaattttcacaatattttatctatgatttaagataatac |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9389850 |
gttaattaatgaaagatataagcagaattttgttagagaacttatgtagccttgtatccacaaattttcacaatattttatctatgatttaagataatac |
9389751 |
T |
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| Q |
345 |
acaatatattatcatatgaagtatttagagacaaggatgactgaatgttcagtcttcccttccattttgagataggaatctgtt |
428 |
Q |
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| T |
9389750 |
acaatatattatcatatgaagtatttagagacaaggatgactgaatgttcagccttcccttccattttgagataggaatctgtt |
9389667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 217
Target Start/End: Original strand, 19809989 - 19810093
Alignment:
| Q |
113 |
tcttctccatccagaacaagacagagttcttagtattcgagagaatgcaaggctacaaggatttccagactgctataagctttgtggccctgtcaaacag |
212 |
Q |
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| T |
19809989 |
tcttctcgacccaaaagaaggcagagttcatagcctccgagagaatgtaaggctacaaggatttccagattgttataaactttgcagccctatcaaacag |
19810088 |
T |
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| Q |
213 |
aggta |
217 |
Q |
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||||| |
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| T |
19810089 |
aggta |
19810093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 6 - 428
Target Start/End: Complemental strand, 31939716 - 31939298
Alignment:
| Q |
6 |
gttctttgtttggacttgttgtgcaagtggcagtacttatttcaattgttttctttttcatttctgattctgcattttctcaatcccatgttattccatt |
105 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||| |
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| T |
31939716 |
gttctttgtttggacttgttgtgcaagtggcagtccttatttcaattgttttctttttcatttatgattatgcattttctcaatcccaagttattccatt |
31939617 |
T |
|
| Q |
106 |
tctaggttcttctccatccagaacaagacagagttcttagtattcgagagaatgcaaggctacaaggatttccagactgctataagctttgtggccctgt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31939616 |
tctaggttcttctccatccagaacaagacagagttcttagtatacgagagaatgcaaggctacaaggatttccagactgctataagctttgtggccctgt |
31939517 |
T |
|
| Q |
206 |
caaacagaggtatgtgtttgaactggtatcttatcttgagttaattaatgaaagatataagcagaattt---tgttagagaacttatatagccttgtatc |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| | ||||||| |||| |
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| T |
31939516 |
caaacagaggtatgtgtttgaactggtatcttatcttgagttaattagtgaaagatataagcagaattttgttgttagaaaacttctgtagccttatatc |
31939417 |
T |
|
| Q |
303 |
cacaaattttcacaatattttatctatgatttaagataatacacaatatattatcatatgaagtatttagagacaaggatgactgaatgttcagtcttcc |
402 |
Q |
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||| |||||||| | || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31939416 |
cac-aattttca------tatacttatgatttaagataatacacaatattttatcatatgaagtatttagagacaaggatggctgaatgttcagtcttcc |
31939324 |
T |
|
| Q |
403 |
cttccattttgagataggaatctgtt |
428 |
Q |
| |
|
||||||||||||||| |||||||||| |
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| T |
31939323 |
cttccattttgagattggaatctgtt |
31939298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 50 - 220
Target Start/End: Complemental strand, 13536000 - 13535828
Alignment:
| Q |
50 |
attgttttctttttcatttctgattctgcattttctcaatcccatgtt--attccatttctaggttcttctccatccagaacaagacagagttcttagta |
147 |
Q |
| |
|
|||||| |||||||||| | ||||| ||||||||||||| | | || |||| |||||||||||||||||| || |||||||||||||||||||| | |
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| T |
13536000 |
attgttctctttttcatgtgtgattatgcattttctcaaactctagtctaattctgtttctaggttcttctccacccggaacaagacagagttcttagca |
13535901 |
T |
|
| Q |
148 |
ttcgagagaatgcaaggctacaaggatttccagactgctataagctttgtggccctgtcaaacagaggtatgt |
220 |
Q |
| |
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||||||| ||||| ||| |||| |||||||||||||||||||| ||||| |||||| |||| | |||||||| |
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| T |
13535900 |
ttcgagaaaatgctaggatacagggatttccagactgctataaactttgcggccctaccaaagaaaggtatgt |
13535828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 6 - 428
Target Start/End: Complemental strand, 1337903 - 1337486
Alignment:
| Q |
6 |
gttctttgtttggacttgttgtgcaagtggcagtacttatttcaattgttttctttttcatttctgattctgcattttctcaatcccatgttattccatt |
105 |
Q |
| |
|
|||||||||||||||||||| | |||||| |||||||||||| || |||||||||||||||| ||||| |||||||||||||||| | |||||| |||| |
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| T |
1337903 |
gttctttgtttggacttgttatataagtggaagtacttatttcgatcgttttctttttcatttatgattatgcattttctcaatcctaagttatttcatt |
1337804 |
T |
|
| Q |
106 |
tctaggttcttctccatccagaacaagacagagttcttagtattcgagagaatgcaaggctacaaggatttccagactgctataagctttgtggccctgt |
205 |
Q |
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|
|||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1337803 |
tctaggctcttctccatccagaccaagacagagttcttagcattcgagagaatgcaaggctacaaggatttccagactgctataagctttgtggccctgt |
1337704 |
T |
|
| Q |
206 |
caaacagaggtatgtgtttgaactggtatcttatcttgagttaattaatgaaagatataagcagaattt---tgttagagaacttatatagccttgtatc |
302 |
Q |
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|||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||||||| ||||| | ||| |||||| |
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| T |
1337703 |
caaacagaggtatgtgttcgaactggtatcttatctggagttaattaatgaaggatataaacagaattttgatgttagaaaacttctgtagaattgtata |
1337604 |
T |
|
| Q |
303 |
cacaaattttcacaatattttatctatgatttaagataat--acacaatatattatcatatgaagtatttagagacaaggatgactgaatgttcagtctt |
400 |
Q |
| |
|
|||||| |||| | ||| |||||||||||||||| ||||||||| |||| | |||||| |||| ||||||||| | |||||||||||||||| |
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| T |
1337603 |
cacaaa-gttca------tatatttatgatttaagataatacacacaatattttatgacatgaag--tttaaagacaaggacggctgaatgttcagtctt |
1337513 |
T |
|
| Q |
401 |
cccttccattttgagataggaatctgtt |
428 |
Q |
| |
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||||||||||||| || ||||| |||| |
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| T |
1337512 |
-ccttccattttgaaattggaatatgtt |
1337486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 6 - 251
Target Start/End: Complemental strand, 5639781 - 5639537
Alignment:
| Q |
6 |
gttctttgtttggacttgttgtgcaagtggcagtacttatt-tcaattgttttctttttcatttctgattctgcattttctcaatcccatgttattccat |
104 |
Q |
| |
|
|||| |||| ||||||||||||| ||||||||||| ||||| || ||| |||||||||||| | ||| |||||||||||| || | |||||| || |
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| T |
5639781 |
gttcattgtctggacttgttgtgtaagtggcagta-ttattctcgattaatttctttttcatgcatcattatgcattttctcattctaa-gttattttat |
5639684 |
T |
|
| Q |
105 |
ttctaggttcttctccatccagaacaagacagagttcttagtattcgagagaatgcaaggctacaaggatttccagactgctataagctttgtggccctg |
204 |
Q |
| |
|
| |||| |||| |||||||| | ||||||||||| |||| |||||||||||||||||||| || |||||||| || |||||||| |||||||||||| |
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|
| T |
5639683 |
gtataggctcttatccatccaaagcaagacagagtacttaccattcgagagaatgcaaggcttcagggatttcctgattgctataaactttgtggcccta |
5639584 |
T |
|
| Q |
205 |
tcaaacagaggtatgtgtttgaactggtatcttatcttgagttaatt |
251 |
Q |
| |
|
| ||| | ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5639583 |
taaaagaaaggtatgtgtttgaactggtatcttatcttgagttaatt |
5639537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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