View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12599_low_21 (Length: 421)
Name: NF12599_low_21
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 27560262 - 27559855
Alignment:
| Q |
1 |
aacagaacgttggcttgacaatattaacaatatatttgtctggtcaaagcaatttagcataccaacaaaaaactccaaatttgagttatgaagtctatat |
100 |
Q |
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| T |
27560262 |
aacagaacgttggcttgacaatattaacaatatatttgtctggtcaaagcaatttagcataccaataaaaaactccaaatttgagttatgaagtctatat |
27560163 |
T |
|
| Q |
101 |
gagactcggttattaatttgctgtgtacacaaaattttaaacttttcttgctttgattacataactgatggacttcttgcactacttatgttactgggag |
200 |
Q |
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| T |
27560162 |
gagactcagttattaattagctgtgtacacaacattttaaacttttcatgctttgattacataactgatggacttcttgcactacttatgttactgggag |
27560063 |
T |
|
| Q |
201 |
gaagtgactgatttcacataacta---caaagcagtggattttttctttctttctggattattgattaatcaagttgttggcacaacactcggaccacca |
297 |
Q |
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| T |
27560062 |
gaagtgactgatttcacataactacttcaaagcagtggattttttctttctttctggattattgattaatcaagttgttggcacaacactcggaccacca |
27559963 |
T |
|
| Q |
298 |
tgtctgccaatttccaagtaacagtaacaccagatagtatattgccaccaactgtggtcttcccttatctcaaatttcattatttaataatttgacaaac |
397 |
Q |
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| T |
27559962 |
tgtctgccaatttccaagtaacagtaacaccagatagtatattgtcaccaactgtggtcttcccttatctcaaatttcattatttaataatttgacaaac |
27559863 |
T |
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| Q |
398 |
caattcct |
405 |
Q |
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| T |
27559862 |
caattcct |
27559855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 326
Target Start/End: Original strand, 27586793 - 27586828
Alignment:
| Q |
291 |
accaccatgtctgccaatttccaagtaacagtaaca |
326 |
Q |
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| T |
27586793 |
accaccatgtctgccaatttccaagtaacaataaca |
27586828 |
T |
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