View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12599_low_22 (Length: 404)

Name: NF12599_low_22
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12599_low_22
NF12599_low_22
[»] chr4 (3 HSPs)
chr4 (16-352)||(29353687-29354023)
chr4 (16-90)||(29340732-29340806)
chr4 (342-378)||(2607859-2607895)
[»] chr1 (2 HSPs)
chr1 (16-97)||(44660848-44660929)
chr1 (16-72)||(44683933-44683989)
[»] chr7 (2 HSPs)
chr7 (344-382)||(34015873-34015911)
chr7 (347-379)||(38163088-38163120)
[»] chr5 (1 HSPs)
chr5 (305-351)||(2060293-2060339)
[»] chr8 (3 HSPs)
chr8 (334-382)||(17070601-17070650)
chr8 (334-382)||(17577622-17577671)
chr8 (293-351)||(14806355-14806413)
[»] chr6 (1 HSPs)
chr6 (347-378)||(8849979-8850010)
[»] chr3 (2 HSPs)
chr3 (344-375)||(23509255-23509286)
chr3 (274-347)||(40740040-40740112)


Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 352
Target Start/End: Original strand, 29353687 - 29354023
Alignment:
Q  16 ttcactgtgatggagctttatttggaatcatgttgccttttatccaacaagtaagttatagttctttacataaaaattacttatcaacacacacatttct 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29353687 ttcattgtgatggagctttatttggaatcatgttgccttttatccaacaagtaagttatagttctttacataaaatttacttatcaacacacacatttct 29353786  T
Q  116 attggtagattgaaattagggttttgattattgttgttataattcatgccataggtacaaatgattatatatgtcaaaaggataatgtaccttagagggt 215  Q
    || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29353787 atcggtggattgaaattagggttttgattattgttgttataattcatgccataggtacaaaggattatatatgtcaaaaggataatgtaccttagagggt 29353886  T
Q  216 catgtacccgagaggatgatgtaccctatagggtcaccatccagagggtcaccacaatggatgtgttggttccctagtctaatgtccagttgttatgatc 315  Q
     ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  29353887 tatgtacccgagaggatgatgtaccctagagggtcaccatccagagtgtcaccacaatggatgtgttggttccctagtctaatgtctagttgttatgatg 29353986  T
Q  316 tatatgctttagattagaacaagtttgttagaagtta 352  Q
     ||||||||||||||||||| ||||||||||||||||    
T  29353987 catatgctttagattagaactagtttgttagaagtta 29354023  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 29340732 - 29340806
Alignment:
Q  16 ttcactgtgatggagctttatttggaatcatgttgccttttatccaacaagtaagttatagttctttacataaaa 90  Q
    |||| |||||||||||| |||||||||||||||||||||||||| | |||||||||||| |||||||||||||||    
T  29340732 ttcattgtgatggagctctatttggaatcatgttgccttttatcaaccaagtaagttatggttctttacataaaa 29340806  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 378
Target Start/End: Complemental strand, 2607895 - 2607859
Alignment:
Q  342 gttagaagttagttggataagattgagttagttagtt 378  Q
    |||||||||||||||||| ||||||||||||||||||    
T  2607895 gttagaagttagttggatgagattgagttagttagtt 2607859  T

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Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 44660929 - 44660848
Alignment:
Q  16 ttcactgtgatggagctttatttggaatcatgttgccttttatccaacaagtaagttatagttctttacataaaaattactt 97  Q
    ||||||||||||||||| |||||||||| ||||||||||||||  |||||||||||||  |||||||||||||| |||||||    
T  44660929 ttcactgtgatggagctctatttggaattatgttgccttttataaaacaagtaagttactgttctttacataaatattactt 44660848  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 44683989 - 44683933
Alignment:
Q  16 ttcactgtgatggagctttatttggaatcatgttgccttttatccaacaagtaagtt 72  Q
    ||||||||||||||||| |||||||||| ||||||||||||||  ||||||| ||||    
T  44683989 ttcactgtgatggagctctatttggaattatgttgccttttataaaacaagtgagtt 44683933  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 344 - 382
Target Start/End: Original strand, 34015873 - 34015911
Alignment:
Q  344 tagaagttagttggataagattgagttagttagttagtt 382  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  34015873 tagaagttagttgaataagattgagttagttagttagtt 34015911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 379
Target Start/End: Original strand, 38163088 - 38163120
Alignment:
Q  347 aagttagttggataagattgagttagttagtta 379  Q
    |||||||||||||||||||||||||||||||||    
T  38163088 aagttagttggataagattgagttagttagtta 38163120  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 2060339 - 2060293
Alignment:
Q  305 ttgttatgatctatatgctttagattagaacaagtttgttagaagtt 351  Q
    |||||||||| ||||| ||||||||||| ||||||||||||||||||    
T  2060339 ttgttatgatgtatatactttagattagtacaagtttgttagaagtt 2060293  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 382
Target Start/End: Original strand, 17070601 - 17070650
Alignment:
Q  334 acaagtttgttagaagttag-ttggataagattgagttagttagttagtt 382  Q
    |||| ||||||||||||||| |||||||||||||||| ||||||||||||    
T  17070601 acaaatttgttagaagttagattggataagattgagtaagttagttagtt 17070650  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 382
Target Start/End: Complemental strand, 17577671 - 17577622
Alignment:
Q  334 acaagtttgttagaagttag-ttggataagattgagttagttagttagtt 382  Q
    |||| ||||||||||||||| |||||||||||||||| ||||||||||||    
T  17577671 acaaatttgttagaagttagattggataagattgagtaagttagttagtt 17577622  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 351
Target Start/End: Complemental strand, 14806413 - 14806355
Alignment:
Q  293 tctaatgtccagttgttatgatctatatgctttagattagaacaagtttgttagaagtt 351  Q
    ||||||||  |||||||||||| || || |||||||||| ||||||||||||| |||||    
T  14806413 tctaatgtatagttgttatgatgtacatactttagattaaaacaagtttgttaaaagtt 14806355  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 347 - 378
Target Start/End: Complemental strand, 8850010 - 8849979
Alignment:
Q  347 aagttagttggataagattgagttagttagtt 378  Q
    ||||||||||||||||||||||||||||||||    
T  8850010 aagttagttggataagattgagttagttagtt 8849979  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 375
Target Start/End: Original strand, 23509255 - 23509286
Alignment:
Q  344 tagaagttagttggataagattgagttagtta 375  Q
    ||||||||||||||||||||||||||||||||    
T  23509255 tagaagttagttggataagattgagttagtta 23509286  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 40740112 - 40740040
Alignment:
Q  274 ggatgtgttggttccctagtctaatgtccagttgttatgatctatatgctttagattagaacaagtttgttaga 347  Q
    ||||||||||||||  ||||||| | | |||| |||||||||||||| || |||||||  ||||||||||||||    
T  40740112 ggatgtgttggttcattagtctagtctacagt-gttatgatctatatactgtagattatcacaagtttgttaga 40740040  T

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