View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12599_low_23 (Length: 404)
Name: NF12599_low_23
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 390
Target Start/End: Original strand, 47298998 - 47299369
Alignment:
| Q |
19 |
atcggccacagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataaccaaatgggttttcacaaagcttccttgca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
47298998 |
atcggccacagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataaccaaatgggtttccacaaagcttccttgca |
47299097 |
T |
|
| Q |
119 |
gtggtgacggccgctgggtaagcaaaacagttaccatagtatccaacaagtggcgaattgttaacattaaaccttgagcgtgcattggcgatgcacatca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
47299098 |
gtggtgacggccgctgggtaagcaaaacagttaccgtagtatccaacaagtggcgaattgttaacattaaacctcgagcgtgcattggcgatgcacatca |
47299197 |
T |
|
| Q |
219 |
ttcgtacctcttcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaaggtgaaa |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
47299198 |
ttcgtacctcttcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagcgataagatcgaatgtggtgcattgacgaaggtgaaa |
47299297 |
T |
|
| Q |
319 |
tggaaccaagagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatggactagagaagcagt |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47299298 |
tggaaccaagagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatggactagagaagcagt |
47299369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 390
Target Start/End: Original strand, 47292391 - 47292762
Alignment:
| Q |
19 |
atcggccacagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataaccaaatgggttttcacaaagcttccttgca |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||| |
|
|
| T |
47292391 |
atcggccacagaatgcatgtattcctcagtaacttcagcttttaattttcttaccaactccactgcataaccaaatggatttccacaaagcttccctgca |
47292490 |
T |
|
| Q |
119 |
gtggtgacggccgctgggtaagcaaaacagttaccatagtatccaacaagtggcgaattgttaacattaaaccttgagcgtgcattggcgatgcacatca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||| |||||||||||| ||| |||||||| |
|
|
| T |
47292491 |
gtggtgacggccgctgggtaagcaaaacagttaccgtaatatccaacaagtggcgaattgttaatgttaaacctcgagcgtgcattgacgacgcacatca |
47292590 |
T |
|
| Q |
219 |
ttcgtacctcttcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaaggtgaaa |
318 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47292591 |
ttcgtacctctttatccgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagcgataagatcaaatgtggtgcattgacgaaggtgaaa |
47292690 |
T |
|
| Q |
319 |
tggaaccaagagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatggactagagaagcagt |
390 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
47292691 |
tggaaccaagagacgaagcgcagctatgtcagaagctctaaagaagaaagatcgatgaactagagaagcagt |
47292762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 26 - 381
Target Start/End: Complemental strand, 47267850 - 47267495
Alignment:
| Q |
26 |
acagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataaccaaatgggttttcacaaagcttccttgcagtggtga |
125 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| |||||||||||| ||||||||||| |
|
|
| T |
47267850 |
acagaatgcatatattcctctgtaacttcagcttttaattttcttaccaactccacagcataacctaatgagtttccacaaagcttccctgcagtggtga |
47267751 |
T |
|
| Q |
126 |
cggccgctgggtaagcaaaacagttaccatagtatccaacaagtggcgaattgttaacattaaaccttgagcgtgcattggcgatgcacatcattcgtac |
225 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| || ||||||||| | || ||||||||||||| |
|
|
| T |
47267750 |
cggccgccgggtaagcaaaacaattaccgtagtatccaacaagtggcgaattgttagcattaaacctcgaacgtgcattgacaatacacatcattcgtat |
47267651 |
T |
|
| Q |
226 |
ctcttcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaaggtgaaatggaacc |
325 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| |
|
|
| T |
47267650 |
ctcgtcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtacaatggcgaaggtgaaatggaacc |
47267551 |
T |
|
| Q |
326 |
aagagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatggactag |
381 |
Q |
| |
|
||||||||||| | ||||| |||| |||||||||||||||||||| ||||| |
|
|
| T |
47267550 |
aagagacgaagcacaacaatgtctgaagtcctaaagaagaaagattgatgaactag |
47267495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 23 - 380
Target Start/End: Complemental strand, 47283818 - 47283461
Alignment:
| Q |
23 |
gccacagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataaccaaatgggttttcacaaagcttccttgcagtgg |
122 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| ||||||| |||||||| ||| |||||||||||||| || |||||| |||||||||||| ||| |||| |
|
|
| T |
47283818 |
gccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactgcataacctaaagggtttccacaaagcttccctgcggtgg |
47283719 |
T |
|
| Q |
123 |
tgacggccgctgggtaagcaaaacagttaccatagtatccaacaagtggcgaattgttaacattaaaccttgagcgtgcattggcgatgcacatcattcg |
222 |
Q |
| |
|
|||| || || ||| ||||||||||||||||||| ||||||||||||||||||| || | | |||||||||| |||||||| |||||||||||||||| |
|
|
| T |
47283718 |
tgacagcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaatggtcagccctaaaccttgaacgtgcattaacgatgcacatcattcg |
47283619 |
T |
|
| Q |
223 |
tacctcttcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaaggtgaaatgga |
322 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
47283618 |
tacttcttcatctggctctaactgcaatgcttttgtgcggcaacaccaaaaacatgcggtgataagatcaaatgtactgcattgacgaaggtgaaatgga |
47283519 |
T |
|
| Q |
323 |
accaagagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatggacta |
380 |
Q |
| |
|
| |||| |||| | || ||||||| |||| | |||||||||||||||||||||||| |
|
|
| T |
47283518 |
atcaagtgacggattgcagctatgtgagaaagtgtaaagaagaaagattgatggacta |
47283461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 23 - 323
Target Start/End: Complemental strand, 47279225 - 47278925
Alignment:
| Q |
23 |
gccacagaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataaccaaatgggttttcacaaagcttccttgcagtgg |
122 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| ||||||| |||||||| ||| |||||| ||||||| || || ||| |||||||||||| ||| |||| |
|
|
| T |
47279225 |
gccaaagaatgcatgtattcttctgtaacttgagcttttgcttttcttatcaattccactccataacctaaaggatttccacaaagcttccctgcggtgg |
47279126 |
T |
|
| Q |
123 |
tgacggccgctgggtaagcaaaacagttaccatagtatccaacaagtggcgaattgttaacattaaaccttgagcgtgcattggcgatgcacatcattcg |
222 |
Q |
| |
|
|||| || || ||| ||||||||||||||||||| ||||||||||||||||||| || | | |||||||||| |||||||| |||||||||||||||| |
|
|
| T |
47279125 |
tgacagcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaatggtcagccctaaaccttgaacgtgcattaacgatgcacatcattcg |
47279026 |
T |
|
| Q |
223 |
tacctcttcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaaggtgaaatgga |
322 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||| || |||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
47279025 |
tacttcttcatctggctctaactgcaatgcttttgtacggcaacaccaaaaacatgcggtgataagatcaaatgtactgcattgacgaaggtgaaatgga |
47278926 |
T |
|
| Q |
323 |
a |
323 |
Q |
| |
|
| |
|
|
| T |
47278925 |
a |
47278925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 28 - 380
Target Start/End: Complemental strand, 47242944 - 47242588
Alignment:
| Q |
28 |
agaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataaccaaatgggttttcacaaagcttccttgcagtggtgacg |
127 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| |||||||| |||||||||||||||||| ||| ||||| ||||||||| | |||| |||||||| |
|
|
| T |
47242944 |
agaatgcatgtattcctctgtaacttgagtttttgcttttcttatcaactccactgcataacctaattggtttccacaaagctcctttgcggtggtgaca |
47242845 |
T |
|
| Q |
128 |
gccgctgggtaagcaaaacagttaccatagtatccaacaagtggcgaattgttaacattaaaccttgagcgtgcattggcgatgcacatcattcgtacct |
227 |
Q |
| |
|
||||| | | |||||| || ||||| || |||||||||| ||| |||| || ||||||| || |||||||| ||||||||||||||||||||| |
|
|
| T |
47242844 |
gccgccgagaaagcaatgcaattaccgtaatatccaacaaacaaagaagggttagcactaaacctggaacgtgcattaacgatgcacatcattcgtacct |
47242745 |
T |
|
| Q |
228 |
cttcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatc----gaatgtggtgcattgacgaaggtgaaatggaa |
323 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||| || |||||| || ||| |||||||||||| ||||| ||||| ||| ||||||||| ||||| |
|
|
| T |
47242744 |
cttcatctggctctatctgcaatgcttttgtgcggcagcaccaataatatgcagtgataagatcaaattaatgtagtgcaatgatgaaggtgaattggaa |
47242645 |
T |
|
| Q |
324 |
ccaagagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatggacta |
380 |
Q |
| |
|
||||| ||||| ||||||| || || | | |||||||||||||||||||||| |
|
|
| T |
47242644 |
ccaagcaacgaatcacagctatgtgagcaggtgtgaagaagaaagattgatggacta |
47242588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 32 - 380
Target Start/End: Complemental strand, 47257067 - 47256716
Alignment:
| Q |
32 |
tgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataaccaaatgggttttcacaaagcttccttgcagtggtgacggccg |
131 |
Q |
| |
|
|||||||| | ||||||||||| ||||||| |||||||| |||||||||||||||||| ||| ||||| ||||||||| | |||| |||||||| |||| |
|
|
| T |
47257067 |
tgcatgtacttctctgtaacttgagcttttgcttttcttatcaactccactgcataacctaattggtttccacaaagctcctttgcggtggtgactgccg |
47256968 |
T |
|
| Q |
132 |
ctgggtaagcaaaacagttaccatagtatccaacaagtggcgaa---ttgttaacattaaaccttgagcgtgcattggcgatgcacatcattcgtacctc |
228 |
Q |
| |
|
| | | |||||| |||||| ||||| ||||||| || | |||| || ||| || ||||||| ||||||||||| |||||||||||||||| || || |
|
|
| T |
47256967 |
ccgagaaagcaatacagttgccataatatccaatgagcgacgaacggttattagcactaaacctcgagcgtgcattaacgatgcacatcattcgcacatc |
47256868 |
T |
|
| Q |
229 |
ttcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaaggtgaaatggaaccaag |
328 |
Q |
| |
|
|||||||| |||| |||||||||||||||||| || |||||| |||||| ||||||||||||| ||| ||||| || |||||||| |||||||||| |
|
|
| T |
47256867 |
ttcatctggttctacctgcaatgcttttgtgcggcagcaccaataacatgcagtgataagatcgtatgcagtgcaccgagaaaggtgaagtggaaccaag |
47256768 |
T |
|
| Q |
329 |
agacgaagtgtggctatgtcagaagctctaaagaagaaagattgatggacta |
380 |
Q |
| |
|
|||||| | ||||||| || | | | |||||||||||||||||||||| |
|
|
| T |
47256767 |
cgacgaatcgcagctatgtgagcggatgtgaagaagaaagattgatggacta |
47256716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 28 - 380
Target Start/End: Complemental strand, 32731611 - 32731259
Alignment:
| Q |
28 |
agaatgcatgtattcctctgtaacttcagcttttaattttcttaccaactccactgcataaccaaatgggttttcacaaagcttccttgcagtggtgacg |
127 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| |||||||| |||||||||||||||||| ||| ||||| ||||||||| | |||| |||||||| |
|
|
| T |
32731611 |
agaatgcatgtattcctctgtaacttgagtttttgcttttcttatcaactccactgcataacctaattggtttccacaaagctcctttgcggtggtgaca |
32731512 |
T |
|
| Q |
128 |
gccgctgggtaagcaaaacagttaccatagtatccaacaagtggcgaattgttaacattaaaccttgagcgtgcattggcgatgcacatcattcgtacct |
227 |
Q |
| |
|
||||| | | |||||| ||| ||||| || ||||||| || ||| |||| || ||||||| || |||||||| ||||||||||||||||||||| |
|
|
| T |
32731511 |
gccgccgagaaagcaatacaattaccgtaatatccaataaacaaagaagggttagcactaaacctggaacgtgcattaacgatgcacatcattcgtacct |
32731412 |
T |
|
| Q |
228 |
cttcatctgcctctaactgcaatgcttttgtgcgacaacaccaaaaacatgaagtgataagatcgaatgtggtgcattgacgaaggtgaaatggaaccaa |
327 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||| || |||||| |||||| | |||||||||| ||||| ||||| ||| ||||||||| ||||||||| |
|
|
| T |
32731411 |
cttcatctggctctatctgcaatgcttttgtgcggcagcaccaataacatgcactgataagatcaaatgtagtgcaatgatgaaggtgaattggaaccaa |
32731312 |
T |
|
| Q |
328 |
gagacgaagtgtggctatgtcagaagctctaaagaagaaagattgatggacta |
380 |
Q |
| |
|
| ||||| | ||||||| || || | | |||||||||||||||||||||| |
|
|
| T |
32731311 |
gcaacgaatcgcagctatgtgagcaggtgtgaagaagaaagattgatggacta |
32731259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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