View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12599_low_24 (Length: 396)
Name: NF12599_low_24
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 36434500 - 36434877
Alignment:
| Q |
1 |
agaaagtttgatagcttagtgaaggattcataaatttttcttagacttcttattgttgaaaatgtaatgacttttggttctaatctggttgcatgctgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36434500 |
agaaagtttgatagcttagtgaaggattcataaatttttcttagacttcttattgttgaaaatgtaatgacttttggttctaatctggttgcatgctgta |
36434599 |
T |
|
| Q |
101 |
atgcaattgctttcaatttgatttgtgtgccttttaattgttatcattttgctttttctcccacaactcaaaaaacaaattgttgaaaattcaaccccaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36434600 |
atgcaattgctttcaatttgatttgtgtgccttttaattgttatcgttttgctttttctcccacaactcaaaaaacaaattgttgaaaattcaaccccaa |
36434699 |
T |
|
| Q |
201 |
acgacataactactatgacaccaatcacacaaacaaacagaaccgcaacatagtgaaatgattgttcttccaattttgaacagaaccctttcatcccatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36434700 |
acgacataactactatgacaccaatcacgcaaacaaacagaactgtaacatagtgaaatgattgttcttccaattttgaacagaaccctttcatcccatg |
36434799 |
T |
|
| Q |
301 |
acaggttgctcacaatatacaagaaattagaagttggaatgtaagaaag--gagaaggctgaagagtgcatcaatggt |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
36434800 |
acaggttgctcacaatatacaagaaattagaagttggaatgtaagaaaggagagaaggctgaacagtgcatcaatggt |
36434877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 44989413 - 44989366
Alignment:
| Q |
1 |
agaaagtttgatagcttagtgaaggattcataaatttttcttagactt |
48 |
Q |
| |
|
||||||| | |||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
44989413 |
agaaagtgtaatagcttagtgaaggattcagaaattcttcttagactt |
44989366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University