View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12599_low_25 (Length: 394)
Name: NF12599_low_25
Description: NF12599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12599_low_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 16195234 - 16195609
Alignment:
| Q |
1 |
caagatagggaaacaatgcaaaggctgctaagggaaggtgatttggttgtgtgtcctgaaggaacaacttgtagggagccttatctattgagatttagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||| |||| || ||||||| |
|
|
| T |
16195234 |
caagatagggaaacaatgcaaaggttgcttagggaaggtgatttagttgtgtgccctgaaggaacaacttgtagggaaccttatttattaaggtttagtt |
16195333 |
T |
|
| Q |
101 |
cactttttgctgaactttctgatgagattgttcctgtggctatgaatgctaatgtgagtttgttttatggtacaacagctagtggattaaaatgtttgga |
200 |
Q |
| |
|
|||||||||||||| || |||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16195334 |
cactttttgctgaaattgctgatgagattgttccagtggctatgaatgataatgtgagtatgttttatggtacaacagctagtggattaaaatgtttgga |
16195433 |
T |
|
| Q |
201 |
cccttttctatttttgatgaatgcatggccaagttataacattgaaatgcttgacaaagttccaagagaactcacttgtgctggtggaaagtctccttat |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
16195434 |
cccttttctatttttgatgaatccatggccaagttataacattgaaatgcttgataaagttccaaaagaactcacttgtgctggtggaaagtctcctttt |
16195533 |
T |
|
| Q |
301 |
gaagtggctgattatatacagaaagaattgagtgatgctttgggatttgagtgcaccaatattacaaggagggata |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16195534 |
gaagtggctgattatatacagaaagaattgagtgatgctttgggatttgagtgcaccaatattacaaggagggata |
16195609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 16147701 - 16147326
Alignment:
| Q |
1 |
caagatagggaaacaatgcaaaggctgctaagggaaggtgatttggttgtgtgtcctgaaggaacaacttgtagggagccttatctattgagatttagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||| || |||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||| |||| || ||||||| |
|
|
| T |
16147701 |
caagatagggaaacaatgcaaaggttgttaagtgaaggtgatttagttgtttgtcctgaaggaacaacttgtagggaaccttatttattaaggtttagtt |
16147602 |
T |
|
| Q |
101 |
cactttttgctgaactttctgatgagattgttcctgtggctatgaatgctaatgtgagtttgttttatggtacaacagctagtggattaaaatgtttgga |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16147601 |
cactttttgctgaacttgctgatgagattgttccagtggctatgaatgttaatgtgagtatgttttatggtacaacagctagtggattaaaatgtttgga |
16147502 |
T |
|
| Q |
201 |
cccttttctatttttgatgaatgcatggccaagttataacattgaaatgcttgacaaagttccaagagaactcacttgtgctggtggaaagtctccttat |
300 |
Q |
| |
|
| |||||||||||||||||||| ||||||| |||||||| |||||| | ||||| || || |||| |||||||||||||||||||||||| ||||||| | |
|
|
| T |
16147501 |
ctcttttctatttttgatgaatccatggcctagttataatattgaagtacttgaaaaggtaccaaaagaactcacttgtgctggtggaaaatctcctttt |
16147402 |
T |
|
| Q |
301 |
gaagtggctgattatatacagaaagaattgagtgatgctttgggatttgagtgcaccaatattacaaggagggata |
376 |
Q |
| |
|
||||||||| |||||||||| | ||| ||| |||||||||| || |||||||| || ||||||||||||||||||| |
|
|
| T |
16147401 |
gaagtggctaattatatacaaagagagttgggtgatgctttagggtttgagtgtacaaatattacaaggagggata |
16147326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 39975923 - 39975548
Alignment:
| Q |
1 |
caagatagggaaacaatgcaaaggctgctaagggaaggtgatttggttgtgtgtcctgaaggaacaacttgtagggagccttatctattgagatttagtt |
100 |
Q |
| |
|
|||||| | ||||||||||||| | | ||||| ||||||||||| ||||| ||||||||||||||||| ||||| || || ||| | || || ||||||| |
|
|
| T |
39975923 |
caagatggtgaaacaatgcaaaagttactaagagaaggtgatttagttgtttgtcctgaaggaacaacatgtagagaaccatatttgttaaggtttagtt |
39975824 |
T |
|
| Q |
101 |
cactttttgctgaactttctgatgagattgttcctgtggctatgaatgctaatgtgagtttgttttatggtacaacagctagtggattaaaatgtttgga |
200 |
Q |
| |
|
|| | |||||||| | || ||||||| || |||||||| |||||| || |||| || |||||||||| || ||||| || ||||| || |||||||| |
|
|
| T |
39975823 |
cattgtttgctgagttggctaatgagatagtgcctgtggcaatgaatactcatgtcagcatgttttatgggaccacagcaagcggattgaagtgtttgga |
39975724 |
T |
|
| Q |
201 |
cccttttctatttttgatgaatgcatggccaagttataacattgaaatgcttgacaaagttccaagagaactcacttgtgctggtggaaagtctccttat |
300 |
Q |
| |
|
||| || | || ||||||||| | |||||||||| | ||| |||| |||| || || || | |||||| || |||||||| |||||||| | | |
|
|
| T |
39975723 |
tcctatttttttcttgatgaatcctaagccaagttatcatattcaaattcttgggaaggtacctaaagaacttacatgtgctggaggaaagtcaagtgtt |
39975624 |
T |
|
| Q |
301 |
gaagtggctgattatatacagaaagaattgagtgatgctttgggatttgagtgcaccaatattacaaggagggata |
376 |
Q |
| |
|
||||||||| |||||||||||||| ||||| ||||||||||| | |||||||| || ||| |||| |||||||||| |
|
|
| T |
39975623 |
gaagtggctaattatatacagaaacaattgggtgatgctttgaggtttgagtgtacaaattttactaggagggata |
39975548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 200
Target Start/End: Complemental strand, 25552961 - 25552813
Alignment:
| Q |
52 |
tgtcctgaaggaacaacttgtagggagccttatctattgagatttagttcactttttgctgaactttctgatgagattgttcctgtggctatgaatgcta |
151 |
Q |
| |
|
||||| ||||||||||||||||| || ||||| | | || |||||| | | |||||||| || ||||||| ||||||||||| ||| | ||| || |
|
|
| T |
25552961 |
tgtccagaaggaacaacttgtagagaaccttacttgctaaggtttagtcctttgtttgctgagctaactgatgatattgttcctgttgctgttgatgtta |
25552862 |
T |
|
| Q |
152 |
atgtgagtttgttttatggtacaacagctagtggattaaaatgtttgga |
200 |
Q |
| |
|
| || ||| |||||||||| |||||||||||||| | ||||||||||| |
|
|
| T |
25552861 |
aggttagtatgttttatggaacaacagctagtgggtataaatgtttgga |
25552813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 4470552 - 4470494
Alignment:
| Q |
52 |
tgtcctgaaggaacaacttgtagggagccttatctattgagatttagttcactttttgc |
110 |
Q |
| |
|
||||| |||||||| |||||||||||||| | ||||||||| |||||| | |||||||| |
|
|
| T |
4470552 |
tgtccggaaggaacgacttgtagggagccatttctattgaggtttagtgctctttttgc |
4470494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University